Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3346 ATGGCCTCTTCCAATGCCATACCCTTGCTTCTCTTCGTGTCTCTTCTCTTCGGAGCCTCCCTCGCTCAACTCTCCGAAAACTTTTACGACAAAACCTGCCCTCGGTTCCCCAACATTGTCCGTGCCGCCGTCAAGAAAGCCCTCGACTCCGACATCCGTGCCGGCGCTAAACTCATCCGCTTCCATTTCCACGACTGCTTCGTCAATGGCTGTGACGGGTCTGTTTTGTTAGAGGATGCTCCTGGCATCGTCAGTGAGCTTAACTCTGGCGGAAATCGAGGAATCCAAGGCCTTGAAATCATTGATGCTATCAAAGCCGCTGTCGAGGCCGAATGCCCCGGCGTCGCCTCCTGCGCTGACATCTTAGCTCAGGCCTCTGAGGACTCTGTTGATTTGCAAGGGGGGCCAAGTTGGAGAGTGCTATATGGAAGAAGAGACAGTAGAATAGCGAACAAAACCGGAGCTGACTCGAACCTGGCCGGTCCCACCGAGACTCTAGAGCAACTGAAGAAAAAATTCGGTGCAGTGGGGCTCGGTACCACCGACCTGGTGGCGCTATCGGGAGCGCACACATTCGGGCGATCGAGGTGCAGATTCTTCAGCCACAGATTCGCCAATTTCAACAACACCGGAAGGCCAGATCAATCACTGGACCCCGACTACAGAGGCTTCCTAGAAGGGGTTTGCGCAGCAGGTCCGGACACAAGAGCCAACTTCGACCCGACAACGCCGGACACGTTCGACAAAAACTACTACAACAACCTCCAAGCTAAGAAGGGACTGCTGCAGAGCGACCAAGAGCTGTTCTCCACACCCGGGGCCGACACGATCCCCATCGTGAACAGCTTCGCGGCCAATGAAGAAACATTCTTCAGGGAGTTCAGGAGGTCCATGATCAACATGGGGAATATCCAGCCGTTGACCGGCAGCCGCGGGGAGATTAGAAGAAACTGCAGGAGGGTCAACGCTGGCATGGGTGGAGAAGGGCATGATGTTATGTAA 1002 54.89 MASSNAIPLLLFVSLLFGASLAQLSENFYDKTCPRFPNIVRAAVKKALDSDIRAGAKLIRFHFHDCFVNGCDGSVLLEDAPGIVSELNSGGNRGIQGLEIIDAIKAAVEAECPGVASCADILAQASEDSVDLQGGPSWRVLYGRRDSRIANKTGADSNLAGPTETLEQLKKKFGAVGLGTTDLVALSGAHTFGRSRCRFFSHRFANFNNTGRPDQSLDPDYRGFLEGVCAAGPDTRANFDPTTPDTFDKNYYNNLQAKKGLLQSDQELFSTPGADTIPIVNSFAANEETFFREFRRSMINMGNIQPLTGSRGEIRRNCRRVNAGMGGEGHDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62340807 62342521 + Sed0002258.1 Sed01g3346 702650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3346 333 FunFam Peroxidase 160 301 - -
Sed01g3346 333 Gene3D Peroxidase, domain 2 160 301 - -
Sed01g3346 333 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 CDD secretory_peroxidase 23 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g3346 333 Gene3D - 28 322 - -
Sed01g3346 333 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 Pfam Peroxidase 40 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 ProSiteProfiles Plant heme peroxidase family profile. 23 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PANTHER PEROXIDASE 72-RELATED 13 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3346 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3346 Sed-Chr1:62340807 Sed05g1092 Sed-Chr5:10191295 1.90E-161 dispersed
Sed01g3346 Sed-Chr1:62340807 Sed01g3348 Sed-Chr1:62427165 1.20E-99 proximal
Sed01g3345 Sed-Chr1:62314685 Sed01g3346 Sed-Chr1:62340807 1.50E-110 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3346 K00430 - csv:101217543 553.132