Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3348 ATGGCTTCTCTTAAAGCAATTGTCCCTTTGGTTTTTGGTTTGTGTTTGGTTGCGTCTGTGAGTGCTCAGCTTAGCTCCACATTCTACGACACGACATGTCCCAATGTATCGAGCGTTGTGCGTGGTGTCGTGCAGCAAGCTCTACAAAGTGACGACAGAGCTGGCGCCAAACTCATCCGTCTTCACTTCCATGACTGCTTTGTCGATGGATGTGATGGATCCGTTCTACTAGAAGATCAAGGTAACATAGTGAGTGAGTTGGGTGCACCTGGAAACGGAGGCATCACAGGCTTCAACATTGTTAACGACATCAAAACTGCGGTCGAGAATGTTTGCCCCGGGGTCGTCTCCTGTGCTGACATTCTAGCCCTCTCTTCTCGAGACGGGGTCACCTTGGCGAGCGGGCAGGGTTGGACAGTTTTATTGGGAAGAAGAGATAGTTTAACGGCAAATTTGACTGGCGCTAGGGATAGGCTTCCAAGTCCTTTTGAGAATCTCACACAACTTCAACAAAAGTTTAGGGATGTTGGCCTCGATGACACTACTGATCTTGTTTCTTTATCAGGTGCACACACGTTTGGGCGTTCAAGGTGCCGATTTTTCGACCAGCGGCTAAACACATCGAACCCGGACCCAACCCTAGACTCCACATATGCCAATCAGCTTCGACAAAACTGTCAACCAGGGCGAGACACATTCGTGAATCTTGACCCGACCACACCGGACACATTCGACAACAACTACTACACAAATCTTCAAACTAACCGTGGACTTCTCGGAAGTGATCAAGTTCTGTTCTCCACGACCGGGGCTTCAACAATCAGTGTCGTCAACTCGTTCGCCAACAGTGCGAGCCAATTCGCTGCCGCCTTTGCTCAATCAATGATTAATATGGGAAATATCAGCCCTTTGACTGGAACCAACGGAGAAATCAGGATTAATTGTAGAAGGCCCAATTAA 960 48.44 MASLKAIVPLVFGLCLVASVSAQLSSTFYDTTCPNVSSVVRGVVQQALQSDDRAGAKLIRLHFHDCFVDGCDGSVLLEDQGNIVSELGAPGNGGITGFNIVNDIKTAVENVCPGVVSCADILALSSRDGVTLASGQGWTVLLGRRDSLTANLTGARDRLPSPFENLTQLQQKFRDVGLDDTTDLVSLSGAHTFGRSRCRFFDQRLNTSNPDPTLDSTYANQLRQNCQPGRDTFVNLDPTTPDTFDNNYYTNLQTNRGLLGSDQVLFSTTGASTISVVNSFANSASQFAAAFAQSMINMGNISPLTGTNGEIRINCRRPN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62427165 62429492 + Sed0001783.1 Sed01g3348 702652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3348 319 Gene3D Peroxidase, domain 2 160 298 - -
Sed01g3348 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 FunFam Peroxidase 160 298 - -
Sed01g3348 319 PANTHER PEROXIDASE 72-RELATED 12 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 CDD secretory_peroxidase 23 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g3348 319 FunFam Peroxidase 27 176 - -
Sed01g3348 319 ProSiteProfiles Plant heme peroxidase family profile. 23 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 Gene3D - 28 319 - -
Sed01g3348 319 SUPERFAMILY Heme-dependent peroxidases 23 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Sed01g3348 319 Pfam Peroxidase 40 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Sed01g3348 319 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3348 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3348 Sed-Chr1:62427165 Sed05g1089 Sed-Chr5:10037705 5.80E-139 dispersed
Sed01g3346 Sed-Chr1:62340807 Sed01g3348 Sed-Chr1:62427165 1.20E-99 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3348 K00430 - csv:101212957 481.485