Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3350 ATGAGTACTGTTGAATTCAAAGAGGAGGGAATGTATCAGTATCAGAAGTCCAGGGAAGAACATGGCTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACTGAGTTGCGCCTTACATCCATTGATTCTCAAACAGCAACTTCTCGACCGGATTTCAAAGGTGTCTCTCTGAGGAAAGCTTCCACCGGCGGTTTTTCCAGGAATCGTAATGACGTACACGAACTACTCGATTGTTCTGTTTGTATGAACTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCATAACTGCTGCCCTACCTGCCGCCATGAGCTAGGGAACATAAGGTGTCTAGCGCTAGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTGTGTATGAAAACCTAGGTTGCATTGACATGTTCCCTTACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGCCCGTTCAATTGCCCTTATGCCGGAGGTGAATGTTCTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCACGATGGATCTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCATGAAGTAGAAAATGCTACATGGATGCTAACTGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCTGTATACATGGCGTTCCTCCGGTTCATGGGCGACGACGACGACGCAAAACAATTTTCTTACAGTTTGGAAGTAGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATACCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGCCAAGATGGATTGATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGCAGGAACTCAAGTTAAAGGTTGTAGGGCGAATATGGAGAGTGAGGTGA 978 46.11 MSTVEFKEEGMYQYQKSREEHGSSAASFCKEVTELRLTSIDSQTATSRPDFKGVSLRKASTGGFSRNRNDVHELLDCSVCMNLMHPPIYQCANGHTLCSSCKARVHNCCPTCRHELGNIRCLALEKVAESLELPCVYENLGCIDMFPYYSKLKHEKNCKYRPFNCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGSSFSHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRKLALFCSGNEGQELKLKVVGRIWRVR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62458713 62461671 + Sed0009133.2 Sed01g3350 702654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3350 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 185 IPR013083 -
Sed01g3350 325 Pfam Sina, zinc finger 126 201 - -
Sed01g3350 325 CDD RING-HC_SIAHs 75 113 - -
Sed01g3350 325 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 77 112 IPR049548 -
Sed01g3350 325 Pfam Sina, TRAF-like domain 221 317 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed01g3350 325 FunFam E3 ubiquitin-protein ligase SINAT3 127 185 - -
Sed01g3350 325 ProSiteProfiles Zinc finger SIAH-type profile. 130 190 IPR013010 GO:0008270(InterPro)
Sed01g3350 325 FunFam E3 ubiquitin-protein ligase SINAT5-like 186 318 - -
Sed01g3350 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 129 IPR013083 -
Sed01g3350 325 ProSiteProfiles Zinc finger RING-type profile. 77 113 IPR001841 -
Sed01g3350 325 SUPERFAMILY RING/U-box 59 117 - -
Sed01g3350 325 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 52 320 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed01g3350 325 SUPERFAMILY TRAF domain-like 130 321 - -
Sed01g3350 325 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 186 318 IPR008974 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3350 Sed-Chr1:62458713 Sed05g1084 Sed-Chr5:9965314 2.40E-172 dispersed
Sed01g3349 Sed-Chr1:62458713 Sed01g3350 Sed-Chr1:62458713 2.80E-197 tandem
Sed01g3350 Sed-Chr1:62458713 Sed01g3351 Sed-Chr1:62458713 3.60E-144 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3350 K04506 - csv:101213438 637.106