Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3351 ATGCTTCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCATAACTGCTGCCCTACCTGCCGCCATGAGCTAGGGAACATAAGGTGTCTAGCGCTAGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTGTGTATGAAAACCTAGGTTGCATTGACATGTTCCCTTACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGCCCGTTCAATTGCCCTTATGCCGGAGGTGAATGTTCTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCACGATGGATCTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCATGAAGTAGAAAATGCTACATGGATGCTAACTGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCTGTATACATGGCGTTCCTCCGGTTCATGGGCGACGACGACGACGCAAAACAATTTTCTTACAGTTTGGAAGTAGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATACCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGCCAAGATGGATTGATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGCAGGAACTCAAGTTAAAGGTTGTAGGGCGAATATGGAGAGTGAGGTGA 717 46.72 MLQCANGHTLCSSCKARVHNCCPTCRHELGNIRCLALEKVAESLELPCVYENLGCIDMFPYYSKLKHEKNCKYRPFNCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGSSFSHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRKLALFCSGNEGQELKLKVVGRIWRVR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62458713 62461671 + Sed0009133.3 Sed01g3351 702655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3351 238 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 233 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed01g3351 238 FunFam E3 ubiquitin-protein ligase SINAT3 40 98 - -
Sed01g3351 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 98 IPR013083 -
Sed01g3351 238 ProSiteProfiles Zinc finger SIAH-type profile. 43 103 IPR013010 GO:0008270(InterPro)
Sed01g3351 238 FunFam E3 ubiquitin-protein ligase SINAT5-like 99 231 - -
Sed01g3351 238 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 99 231 IPR008974 GO:0005515(InterPro)
Sed01g3351 238 SUPERFAMILY TRAF domain-like 43 234 - -
Sed01g3351 238 Pfam Sina, TRAF-like domain 134 230 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed01g3351 238 Pfam Sina, zinc finger 39 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3351 Sed-Chr1:62458713 Sed05g1087 Sed-Chr5:9965314 9.40E-134 dispersed
Sed01g3350 Sed-Chr1:62458713 Sed01g3351 Sed-Chr1:62458713 3.60E-144 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3351 K04506 - csv:101213438 484.182