Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3396 | ATGAGAAGATCAGGTGTAAACCAAACAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATTGGCCGAACAATTGGTGAGGGCACATTTGCGAAAGTGAAATTTGCCAAACATTCTGAGAGTGGGGAACATGTAGCAATAAAGATCCTTGACAAAGAGAAGGTTCTAAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCTACAATGAAACTAATAAAGCATCCTCATGTCGTTCAATTGTTTGAGGTGATGGGGAGCAGAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGAATGAGTGAAAAGGAGGCGCGAAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTTTTGTTAGATACCCATGGGGATCTTAAAGTGTCTGATTTTGGACTGAGTGCACTGTCTCAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTTGTACTGCTTGCAGGATACTTGCCTTTTGATGATTCTAATCTTATAAACCTTTATAAAATGATCTCGGCCGCGGAATTTACTTGTCCACCATGGCTTTCTTTAGATGCCATGAAATTAATAACTAGAATTTTGGATCCCAACCCGATGACTCGCATCACCATACCCGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAACCCCCGGTTTTCGAAGAGCATAAGATTGCAAACTTGGATGACGTAGAAGCAGTGTTTAAAGATTCAGAAGAGCACCATGTGACAGAAAAGAAGGAAGAACATCCAGTAGCCATGAATGCCTTTGAGTTAATTTCAATGTCAAAAGGGCTCAACCTTGGTAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACTAGGTTCACCTCTAAATGCACAGCTAATGAAATTGTAAATAAGATTGAAGAAGCTGCCAAACCTCTTGGTTTTGATGTACAAAAGAAGAATTACAAGATGAGACTTGAAAACGTGAAAGCCGGGCGAAAGGGAAACCTTAACGTTGCCACGGAGATTTTGCAAGTGGCACCTTCTGTTCATGTGGTTGAGATGCGAAAAGCAAAGGGCGACACTTTAGAGTTCCACAAGTTTTACAAGAACCTCTCCACCTCTCTAGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCCAGAAATAAAGTGA | 1335 | 40.07 | MRRSGVNQTKVKRLVGKYEIGRTIGEGTFAKVKFAKHSESGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSRTKIFIVLEFVTGGELFDKIVNHGRMSEKEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTHGDLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLINLYKMISAAEFTCPPWLSLDAMKLITRILDPNPMTRITIPEILEDEWFKKDYKPPVFEEHKIANLDDVEAVFKDSEEHHVTEKKEEHPVAMNAFELISMSKGLNLGNLFGTEQEFKRETRFTSKCTANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMPEIK | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 62988816 | 62996045 | + | Sed0022640.5 | Sed01g3396 | 702700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3396 | 444 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 296 | IPR011009 | - | |
Sed01g3396 | 444 | SMART | serkin_6 | 18 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3396 | 444 | ProSiteProfiles | Protein kinase domain profile. | 18 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3396 | 444 | CDD | STKc_SnRK3 | 17 | 272 | - | - | |
Sed01g3396 | 444 | FunFam | Non-specific serine/threonine protein kinase | 310 | 435 | - | - | |
Sed01g3396 | 444 | FunFam | Non-specific serine/threonine protein kinase | 11 | 313 | - | - | |
Sed01g3396 | 444 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 137 | 149 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3396 | 444 | FunFam | Non-specific serine/threonine protein kinase | 9 | 97 | - | - | |
Sed01g3396 | 444 | Pfam | NAF domain | 313 | 372 | IPR004041 | GO:0007165(InterPro) | |
Sed01g3396 | 444 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 47 | IPR017441 | GO:0005524(InterPro) | |
Sed01g3396 | 444 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 7 | 423 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed01g3396 | 444 | Gene3D | Kinase associated domain 1, KA1 | 310 | 435 | - | - | |
Sed01g3396 | 444 | CDD | CIPK_C | 317 | 431 | - | - | |
Sed01g3396 | 444 | Gene3D | Phosphorylase Kinase; domain 1 | 7 | 97 | - | - | |
Sed01g3396 | 444 | ProSiteProfiles | NAF domain profile. | 311 | 335 | IPR018451 | GO:0007165(InterPro) | |
Sed01g3396 | 444 | Pfam | Protein kinase domain | 18 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3396 | 444 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 280 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3396 | Sed-Chr1:62988816 | Sed05g1038 | Sed-Chr5:9096315 | 7.10E-244 | dispersed | |
Sed01g3395 | Sed-Chr1:62988816 | Sed01g3396 | Sed-Chr1:62988816 | 5.60E-257 | tandem | |
Sed01g3396 | Sed-Chr1:62988816 | Sed01g3397 | Sed-Chr1:62988816 | 1.40E-194 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78712 | PF00069 | Pkinase | 7.20E-73 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3396 | - | - | - | 0.0 |