Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3397 | ATGAGAAGATCAGGTGTAAACCAAACAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATTGGCCGAACAATTGGTGAGGGCACATTTGCGAAAGTGAAATTTGCCAAACATTCTGAGAGTGGGGAACATGTAGCAATAAAGATCCTTGACAAAGAGAAGGTTCTAAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCTACAATGAAACTAATAAAGCATCCTCATGTCGTTCAATTGTTTGAGGTGATGGGGAGCAGAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGAATGAGTGAAAAGGAGGCGCGAAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTTTTGTTAGATACCCATGGGGATCTTAAAGTGTCTGATTTTGGACTGAGTGCACTGTCTCAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTTGTACTGCTTGCAGGATACTTGCCTTTTGATGATTCTAATCTTATAAACCTTTATAAAATGATCTCGGCCGCGGAATTTACTTGTCCACCATGGCTTTCTTTAGATGCCATGAAATTAATAACTAGAATTTTGGATCCCAACCCGATGACTCGCATCACCATACCCGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAACCCCCGGTTTTCGAAGAGCATAAGATTGCAAACTTGGATGACGTAGAAGCAGTGTTTAAAGATTCAGAAGAGCACCATGTGACAGAAAAGAAGGAAGAACATCCAGTAGCCATGAATGCCTTTGAGTTAATTTCAATGTCAAAAGGGCTCAACCTTGGTAATTTGTTTGGTACAGAACAGGTTTGCATTTTGCCACTCATGAACGTAGAATATTGTTTGTCTCAGTTGCTACTGTTGTGTCCCAGCTTGAGTACACTTTTTGACATGTATGTTTAG | 1110 | 39.55 | MRRSGVNQTKVKRLVGKYEIGRTIGEGTFAKVKFAKHSESGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSRTKIFIVLEFVTGGELFDKIVNHGRMSEKEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTHGDLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLINLYKMISAAEFTCPPWLSLDAMKLITRILDPNPMTRITIPEILEDEWFKKDYKPPVFEEHKIANLDDVEAVFKDSEEHHVTEKKEEHPVAMNAFELISMSKGLNLGNLFGTEQVCILPLMNVEYCLSQLLLLCPSLSTLFDMYV | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 62988816 | 62996045 | + | Sed0022640.7 | Sed01g3397 | 702701 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3397 | 369 | FunFam | Non-specific serine/threonine protein kinase | 9 | 97 | - | - | |
Sed01g3397 | 369 | SMART | serkin_6 | 18 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3397 | 369 | ProSiteProfiles | Protein kinase domain profile. | 18 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3397 | 369 | CDD | STKc_SnRK3 | 17 | 272 | - | - | |
Sed01g3397 | 369 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 7 | 343 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed01g3397 | 369 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 137 | 149 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3397 | 369 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 47 | IPR017441 | GO:0005524(InterPro) | |
Sed01g3397 | 369 | Pfam | NAF domain | 313 | 337 | IPR004041 | GO:0007165(InterPro) | |
Sed01g3397 | 369 | ProSiteProfiles | NAF domain profile. | 311 | 335 | IPR018451 | GO:0007165(InterPro) | |
Sed01g3397 | 369 | Pfam | Protein kinase domain | 18 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3397 | 369 | Gene3D | Transferase(Phosphotransferase) domain 1 | 8 | 329 | - | - | |
Sed01g3397 | 369 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 297 | IPR011009 | - | |
Sed01g3397 | 369 | FunFam | Non-specific serine/threonine protein kinase | 11 | 313 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3394 | Sed-Chr1:62988240 | Sed01g3397 | Sed-Chr1:62988816 | 7.00E-213 | dispersed | |
Sed01g3397 | Sed-Chr1:62988816 | Sed05g1038 | Sed-Chr5:9096315 | 2.40E-184 | dispersed | |
Sed01g3396 | Sed-Chr1:62988816 | Sed01g3397 | Sed-Chr1:62988816 | 1.40E-194 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78713 | PF00069 | Pkinase | 4.20E-73 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3397 | - | - | - | 0.0 |