Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3397 ATGAGAAGATCAGGTGTAAACCAAACAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATTGGCCGAACAATTGGTGAGGGCACATTTGCGAAAGTGAAATTTGCCAAACATTCTGAGAGTGGGGAACATGTAGCAATAAAGATCCTTGACAAAGAGAAGGTTCTAAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCTACAATGAAACTAATAAAGCATCCTCATGTCGTTCAATTGTTTGAGGTGATGGGGAGCAGAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGAATGAGTGAAAAGGAGGCGCGAAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTTTTGTTAGATACCCATGGGGATCTTAAAGTGTCTGATTTTGGACTGAGTGCACTGTCTCAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTTGTACTGCTTGCAGGATACTTGCCTTTTGATGATTCTAATCTTATAAACCTTTATAAAATGATCTCGGCCGCGGAATTTACTTGTCCACCATGGCTTTCTTTAGATGCCATGAAATTAATAACTAGAATTTTGGATCCCAACCCGATGACTCGCATCACCATACCCGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAACCCCCGGTTTTCGAAGAGCATAAGATTGCAAACTTGGATGACGTAGAAGCAGTGTTTAAAGATTCAGAAGAGCACCATGTGACAGAAAAGAAGGAAGAACATCCAGTAGCCATGAATGCCTTTGAGTTAATTTCAATGTCAAAAGGGCTCAACCTTGGTAATTTGTTTGGTACAGAACAGGTTTGCATTTTGCCACTCATGAACGTAGAATATTGTTTGTCTCAGTTGCTACTGTTGTGTCCCAGCTTGAGTACACTTTTTGACATGTATGTTTAG 1110 39.55 MRRSGVNQTKVKRLVGKYEIGRTIGEGTFAKVKFAKHSESGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSRTKIFIVLEFVTGGELFDKIVNHGRMSEKEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTHGDLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLINLYKMISAAEFTCPPWLSLDAMKLITRILDPNPMTRITIPEILEDEWFKKDYKPPVFEEHKIANLDDVEAVFKDSEEHHVTEKKEEHPVAMNAFELISMSKGLNLGNLFGTEQVCILPLMNVEYCLSQLLLLCPSLSTLFDMYV 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62988816 62996045 + Sed0022640.7 Sed01g3397 702701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3397 369 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Sed01g3397 369 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3397 369 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3397 369 CDD STKc_SnRK3 17 272 - -
Sed01g3397 369 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 343 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed01g3397 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3397 369 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Sed01g3397 369 Pfam NAF domain 313 337 IPR004041 GO:0007165(InterPro)
Sed01g3397 369 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Sed01g3397 369 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3397 369 Gene3D Transferase(Phosphotransferase) domain 1 8 329 - -
Sed01g3397 369 SUPERFAMILY Protein kinase-like (PK-like) 14 297 IPR011009 -
Sed01g3397 369 FunFam Non-specific serine/threonine protein kinase 11 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3394 Sed-Chr1:62988240 Sed01g3397 Sed-Chr1:62988816 7.00E-213 dispersed
Sed01g3397 Sed-Chr1:62988816 Sed05g1038 Sed-Chr5:9096315 2.40E-184 dispersed
Sed01g3396 Sed-Chr1:62988816 Sed01g3397 Sed-Chr1:62988816 1.40E-194 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78713 PF00069 Pkinase 4.20E-73 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3397 - - - 0.0