Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3427 | ATGAAGCAATGGCGAGGCCCAAATCCAGAATCCATTGCAACCTTATGCGTACTGTGCATGGCTCTTGCTCTAGCTCCATTTCTCGGATCAGCTTCATCTTCAACGCACCAGTTTCGTGGAGTTTCTCCCCAAGATGAGGTGTATTACAAGTCGTCGGGTATGATCAAGTGTAGAGACGGTTCTGGCAAATTCTCCATGGCTCAGCTTAATGATGATTACTGCGATTGCCTCGATGGCACCGATGAACCTGGCACATCTGCATGCCCAAGTGGAAAGTTCTATTGTCGAAATGCAGGGCACGCTCCAGTTTTGCTGTTTTCTTCGAGAGTGAACGATGGTATATGTGATTGTTGTGATGGAAGTGATGAATATGACAGCAATGTCAAATGCCCAAATTCGTGCTGGGAAGCTGGGAAAGTGGCAAGAGATAAATTGAAGAAAAAGATTGCAACCCATGAAGAAGGTGTTAAAATCCGTAAACAAGAAGTTGAACATGCAAAAGTCGCAATAAACAAGGATGAGGCAGAGCTATTGAAGTTGAAAAACGAGGAAAAAGTACTAAAAGAGCTTGTTGAACAACTCAAAGAGCGCAAAGAGCAGATAGAGAAGGTAGAAGAGGAGGAGCGATTACGGAAAGAAAAGGAAGAGAAGAAACATTTGAAGAGAGAAAATGACGAGTCCAAAAAAAGTGACTTGACAGAAACAACTAATTTTGGGGATAGCAAAACTCAAGAGGAGGACAATTCAGAAAAAAAGGAAGCTTTCGAAAATGATGATAAGGAATATAAACAAGGAGAAGGCAATGATGATGATAGAATTGAAAACTGGGAGGACTCTCTCAGAGATGAGGCTAGGGTGGAAGAAGTTGACTCAAAACTTGAAACACAACATCCTAATAAAGGGGGAACAGAAGCATCATTGCTGAAAGAGGAGTCAGCAGGAGAGAAAGACATACACTTGGCTAAATCTGAAACTGGGGAAAGAGCTGGCACTAAAGAATCATCTGAAGAAGTCCTCAGACAGGATGATGCTAGATCAGATGAGTTGTCACGGGAAGAGTTGGGCCGCCGTGTTGCTTCTCGTTGGACAGGAGAAAATACTGAAGAACAGTCGGGGAATGTGGATAGTACGAAGGATAGTGATGATGAAAGTGATGATGTCTTAAAAGACACACACGAGAATGATGGCTATGCTTCAGATACTGATGACGATCACCATAAATATGATGATGATCTAGAGGATGATTTTGACGATATCAACGGTGGACATCATGATGATTCTACTTCGTCAGAGAGATATTATTCGGATACAGAATTGGACTCACCAGATGTGGAAACCCAAAGTAATCCCACCTGGCTTGAAAAGATACAAAAAACTGTTCGAAATGTCCTCAAAGCTGTTAATATATTCCAGCCTCCAGTGAACCAATCAGATGCTGCTAACGTGCGCAAGGAATATGGTGAATCCAGTGCCAGGTTATCAAAAATACAGTCTAGGATCTCAAGTTTATCAGAGAAACTAAAGAATGATTTCGGTCCAGAGAAGGAGTTCTATTCATTTTATGACCAATGTTTTGAAAGCAAGGAGAATAAATACGTTTACAAAATCTGCCCTTACAAACAAGCTTCACAGGGTGAGGGGCACTCATCAACTCGTTTGGGGCGCTGGGATAAATTTGAGGATTCATATAGGGTTATGATCTTTTCAAGTGGGGATCATTGCTGGAATGGACCTGATAGAAGCTTGAAGGTCAAGCTAAGATGTGGGCTGAAAAATGACATAACCGATGTAGACGAACCAAGCCGTTGCGAATACACGGCCTTGTTATCAACCCCAGCTGCTTGTTTAGAGGAAAGACTTCAGGAACTGAAAAACAAGTTGGACTTGCTGAATAAAGAAGAGGCAGCGAAGCATGACGAACTCTGA | 1926 | 42.26 | MKQWRGPNPESIATLCVLCMALALAPFLGSASSSTHQFRGVSPQDEVYYKSSGMIKCRDGSGKFSMAQLNDDYCDCLDGTDEPGTSACPSGKFYCRNAGHAPVLLFSSRVNDGICDCCDGSDEYDSNVKCPNSCWEAGKVARDKLKKKIATHEEGVKIRKQEVEHAKVAINKDEAELLKLKNEEKVLKELVEQLKERKEQIEKVEEEERLRKEKEEKKHLKRENDESKKSDLTETTNFGDSKTQEEDNSEKKEAFENDDKEYKQGEGNDDDRIENWEDSLRDEARVEEVDSKLETQHPNKGGTEASLLKEESAGEKDIHLAKSETGERAGTKESSEEVLRQDDARSDELSREELGRRVASRWTGENTEEQSGNVDSTKDSDDESDDVLKDTHENDGYASDTDDDHHKYDDDLEDDFDDINGGHHDDSTSSERYYSDTELDSPDVETQSNPTWLEKIQKTVRNVLKAVNIFQPPVNQSDAANVRKEYGESSARLSKIQSRISSLSEKLKNDFGPEKEFYSFYDQCFESKENKYVYKICPYKQASQGEGHSSTRLGRWDKFEDSYRVMIFSSGDHCWNGPDRSLKVKLRCGLKNDITDVDEPSRCEYTALLSTPAACLEERLQELKNKLDLLNKEEAAKHDEL | 641 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 63329066 | 63346843 | + | Sed0010489.1 | Sed01g3427 | 702731 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3427 | 641 | Gene3D | - | 517 | 615 | IPR009011 | - | |
Sed01g3427 | 641 | MobiDBLite | consensus disorder prediction | 203 | 450 | - | - | |
Sed01g3427 | 641 | Coils | Coil | 163 | 230 | - | - | |
Sed01g3427 | 641 | PANTHER | N-LINKED OLIGOSACCHARIDE PROCESSING | 21 | 624 | IPR039794 | GO:0006491(PANTHER)|GO:0017177(PANTHER) | |
Sed01g3427 | 641 | MobiDBLite | consensus disorder prediction | 309 | 363 | - | - | |
Sed01g3427 | 641 | SUPERFAMILY | Mannose 6-phosphate receptor domain | 522 | 615 | IPR009011 | - | |
Sed01g3427 | 641 | MobiDBLite | consensus disorder prediction | 417 | 439 | - | - | |
Sed01g3427 | 641 | ProSiteProfiles | MRH domain profile. | 522 | 617 | IPR044865 | - | |
Sed01g3427 | 641 | MobiDBLite | consensus disorder prediction | 203 | 297 | - | - | |
Sed01g3427 | 641 | MobiDBLite | consensus disorder prediction | 372 | 406 | - | - | |
Sed01g3427 | 641 | Pfam | Glucosidase II beta subunit-like | 32 | 179 | IPR028146 | - | |
Sed01g3427 | 641 | Pfam | Glucosidase II beta subunit-like protein | 485 | 641 | IPR036607 | - | |
Sed01g3427 | 641 | Coils | Coil | 613 | 640 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3270 | Sed-Chr4:43136924 | Sed01g3427 | Sed-Chr1:63329066 | 8.30E-07 | dispersed | |
Sed01g3427 | Sed-Chr1:63329066 | Sed05g2049 | Sed-Chr5:33735185 | 7.80E-26 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3427 | K08288 | - | csv:101221877 | 892.878 |