Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3427 ATGAAGCAATGGCGAGGCCCAAATCCAGAATCCATTGCAACCTTATGCGTACTGTGCATGGCTCTTGCTCTAGCTCCATTTCTCGGATCAGCTTCATCTTCAACGCACCAGTTTCGTGGAGTTTCTCCCCAAGATGAGGTGTATTACAAGTCGTCGGGTATGATCAAGTGTAGAGACGGTTCTGGCAAATTCTCCATGGCTCAGCTTAATGATGATTACTGCGATTGCCTCGATGGCACCGATGAACCTGGCACATCTGCATGCCCAAGTGGAAAGTTCTATTGTCGAAATGCAGGGCACGCTCCAGTTTTGCTGTTTTCTTCGAGAGTGAACGATGGTATATGTGATTGTTGTGATGGAAGTGATGAATATGACAGCAATGTCAAATGCCCAAATTCGTGCTGGGAAGCTGGGAAAGTGGCAAGAGATAAATTGAAGAAAAAGATTGCAACCCATGAAGAAGGTGTTAAAATCCGTAAACAAGAAGTTGAACATGCAAAAGTCGCAATAAACAAGGATGAGGCAGAGCTATTGAAGTTGAAAAACGAGGAAAAAGTACTAAAAGAGCTTGTTGAACAACTCAAAGAGCGCAAAGAGCAGATAGAGAAGGTAGAAGAGGAGGAGCGATTACGGAAAGAAAAGGAAGAGAAGAAACATTTGAAGAGAGAAAATGACGAGTCCAAAAAAAGTGACTTGACAGAAACAACTAATTTTGGGGATAGCAAAACTCAAGAGGAGGACAATTCAGAAAAAAAGGAAGCTTTCGAAAATGATGATAAGGAATATAAACAAGGAGAAGGCAATGATGATGATAGAATTGAAAACTGGGAGGACTCTCTCAGAGATGAGGCTAGGGTGGAAGAAGTTGACTCAAAACTTGAAACACAACATCCTAATAAAGGGGGAACAGAAGCATCATTGCTGAAAGAGGAGTCAGCAGGAGAGAAAGACATACACTTGGCTAAATCTGAAACTGGGGAAAGAGCTGGCACTAAAGAATCATCTGAAGAAGTCCTCAGACAGGATGATGCTAGATCAGATGAGTTGTCACGGGAAGAGTTGGGCCGCCGTGTTGCTTCTCGTTGGACAGGAGAAAATACTGAAGAACAGTCGGGGAATGTGGATAGTACGAAGGATAGTGATGATGAAAGTGATGATGTCTTAAAAGACACACACGAGAATGATGGCTATGCTTCAGATACTGATGACGATCACCATAAATATGATGATGATCTAGAGGATGATTTTGACGATATCAACGGTGGACATCATGATGATTCTACTTCGTCAGAGAGATATTATTCGGATACAGAATTGGACTCACCAGATGTGGAAACCCAAAGTAATCCCACCTGGCTTGAAAAGATACAAAAAACTGTTCGAAATGTCCTCAAAGCTGTTAATATATTCCAGCCTCCAGTGAACCAATCAGATGCTGCTAACGTGCGCAAGGAATATGGTGAATCCAGTGCCAGGTTATCAAAAATACAGTCTAGGATCTCAAGTTTATCAGAGAAACTAAAGAATGATTTCGGTCCAGAGAAGGAGTTCTATTCATTTTATGACCAATGTTTTGAAAGCAAGGAGAATAAATACGTTTACAAAATCTGCCCTTACAAACAAGCTTCACAGGGTGAGGGGCACTCATCAACTCGTTTGGGGCGCTGGGATAAATTTGAGGATTCATATAGGGTTATGATCTTTTCAAGTGGGGATCATTGCTGGAATGGACCTGATAGAAGCTTGAAGGTCAAGCTAAGATGTGGGCTGAAAAATGACATAACCGATGTAGACGAACCAAGCCGTTGCGAATACACGGCCTTGTTATCAACCCCAGCTGCTTGTTTAGAGGAAAGACTTCAGGAACTGAAAAACAAGTTGGACTTGCTGAATAAAGAAGAGGCAGCGAAGCATGACGAACTCTGA 1926 42.26 MKQWRGPNPESIATLCVLCMALALAPFLGSASSSTHQFRGVSPQDEVYYKSSGMIKCRDGSGKFSMAQLNDDYCDCLDGTDEPGTSACPSGKFYCRNAGHAPVLLFSSRVNDGICDCCDGSDEYDSNVKCPNSCWEAGKVARDKLKKKIATHEEGVKIRKQEVEHAKVAINKDEAELLKLKNEEKVLKELVEQLKERKEQIEKVEEEERLRKEKEEKKHLKRENDESKKSDLTETTNFGDSKTQEEDNSEKKEAFENDDKEYKQGEGNDDDRIENWEDSLRDEARVEEVDSKLETQHPNKGGTEASLLKEESAGEKDIHLAKSETGERAGTKESSEEVLRQDDARSDELSREELGRRVASRWTGENTEEQSGNVDSTKDSDDESDDVLKDTHENDGYASDTDDDHHKYDDDLEDDFDDINGGHHDDSTSSERYYSDTELDSPDVETQSNPTWLEKIQKTVRNVLKAVNIFQPPVNQSDAANVRKEYGESSARLSKIQSRISSLSEKLKNDFGPEKEFYSFYDQCFESKENKYVYKICPYKQASQGEGHSSTRLGRWDKFEDSYRVMIFSSGDHCWNGPDRSLKVKLRCGLKNDITDVDEPSRCEYTALLSTPAACLEERLQELKNKLDLLNKEEAAKHDEL 641
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 63329066 63346843 + Sed0010489.1 Sed01g3427 702731
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3427 641 Gene3D - 517 615 IPR009011 -
Sed01g3427 641 MobiDBLite consensus disorder prediction 203 450 - -
Sed01g3427 641 Coils Coil 163 230 - -
Sed01g3427 641 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 21 624 IPR039794 GO:0006491(PANTHER)|GO:0017177(PANTHER)
Sed01g3427 641 MobiDBLite consensus disorder prediction 309 363 - -
Sed01g3427 641 SUPERFAMILY Mannose 6-phosphate receptor domain 522 615 IPR009011 -
Sed01g3427 641 MobiDBLite consensus disorder prediction 417 439 - -
Sed01g3427 641 ProSiteProfiles MRH domain profile. 522 617 IPR044865 -
Sed01g3427 641 MobiDBLite consensus disorder prediction 203 297 - -
Sed01g3427 641 MobiDBLite consensus disorder prediction 372 406 - -
Sed01g3427 641 Pfam Glucosidase II beta subunit-like 32 179 IPR028146 -
Sed01g3427 641 Pfam Glucosidase II beta subunit-like protein 485 641 IPR036607 -
Sed01g3427 641 Coils Coil 613 640 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3270 Sed-Chr4:43136924 Sed01g3427 Sed-Chr1:63329066 8.30E-07 dispersed
Sed01g3427 Sed-Chr1:63329066 Sed05g2049 Sed-Chr5:33735185 7.80E-26 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3427 K08288 - csv:101221877 892.878