Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3441 ATGGGTGAGGCGGTGGCGATCAGTTCGGAGGACGTTGGTTGCGTTCGGGCGGCGGAGATCGACGACGCGGCGGCGGAGGCGGAGAGCGCGGCGGCCGGAGTTGGGATTAAGTGGGAGCGGTTTTTGCCGAAGATGATGATTAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGGCAGATTATCACTGCTCTTCTTCGCAAGTGCTGTTACCGAGTTGCTGCTGTGCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCTCGTAACATAGATCTTATATTGGCGGAAGTTGAATTGCCATCGATCTCTGGATTTGCTCTGTTAACTCTGATTAGGGAACACGAAACCTGCAAAAATATTCCTGTTATAATGATGTCGCCCCAAGATTCTATCAACACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAACCCTTGAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGTGCGAACTGACATTCAAGAAAAGGTTGAAGTCACTTCAGAATATGAGACTGCAAGTAACCACTCCATCGATTATGTTGCTGGTGCTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACAAAGGTAGATTTAGAAGCTGGAAGTATGATACAGGAAAATTCACAGCCTAGGCAGAAAAAAGCCTCTTCGAACGACTTCAAGATTCAGAAAGATGAACGTCACATAAATTTGAGTCAGAGATTAATTATGCATGAAAATGAATCTGGAGGATTGGCAATGAGTTGCTATGTCAAAGCTGATGTGCCAATTACACTAAGCATGGGTCTTGGGCCAATCAATGGTGCAACTGAAGCAGGTAATAATAAGGATTTGCTTGCCAACCCATCCAAAGATGAAACTGCATTTGCCTGTTTCAAGTATCCCGATAATGACAAAAGTACTCCATCCACCAATGCTACCACGAACAAGTTCTCCTCTGCTCTTCATTTGGATCTTTCCCTCAGAAGATATCAACCTAACGATTTCGAGGACCAAGCTGCAGAAGGGCGGGCTACCCTCAATCATTCCAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCATTACAAACACTTCAAGAAAAACCAAGCAGTATCTGTGATGAACAAAAGGAATTTGGAAGCAATCCCGAGTATATTGGAAGTATTGCTGCTACTTCTACCTCTGATACCAATAATCCTACGCTAAGCCTTCAAAAGGATAGTACATCTGTGCCTTTGATAACCAGTCAATTTACTCACTCTAATACTCAATGCTCTGGTTATGGCTCTTTACTTTCTCCAAACTTGTGTACACAACGGGGTACGCCATCGCCTCCACGCCCGACTTTAGTATCTCATCCCGAACCCATCTTTGCAAAGCAGATGGTTTATACTTTACACCATGAAAATCATCATTTGGAGCAGTTTCTGAACCAACCAAGCCGAAAGACAGAAAACTCAGGGCAAAAGTTGGAGTGTGCAGAGAATCAAGGACATATATCACCTGATCATAGTGCAAACAGTAGTCTATGTGGTGTTAATACAAGTCACATTCGAAGCATGGGATATCCTAGCATGTGCGGAAGCAACAGCAATGTCGACCAGGTTGGCATGGCTGCAAGGGTTACATCTGAGAGCAAACATGAAGAAGCTTTGTTTTGGCAAGGGGGAGATTCTCAGCGGAGCAGTCAAAGAGAAGCAGCGCTAACAAAGTTTCGACTGAAACGAAAAGATCGATGTTATGAGAAAAAGGTGCGTTATGAGAGCCGAAAAAAGCTGGCTGAGCAGCGTCCTAGAGTGAAGGGACAGTTCGTTCGTAGAGAAACCGATCCATTTCCTGTCGAAATAATGGCAACGGTTAGTTGTTTGAAATAG 1935 44.5 MGEAVAISSEDVGCVRAAEIDDAAAEAESAAAGVGIKWERFLPKMMIRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNIDLILAEVELPSISGFALLTLIREHETCKNIPVIMMSPQDSINTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDIQEKVEVTSEYETASNHSIDYVAGAQRNNKNIEKGSDTQSSCTKVDLEAGSMIQENSQPRQKKASSNDFKIQKDERHINLSQRLIMHENESGGLAMSCYVKADVPITLSMGLGPINGATEAGNNKDLLANPSKDETAFACFKYPDNDKSTPSTNATTNKFSSALHLDLSLRRYQPNDFEDQAAEGRATLNHSSASAFTRYTFRPLQTLQEKPSSICDEQKEFGSNPEYIGSIAATSTSDTNNPTLSLQKDSTSVPLITSQFTHSNTQCSGYGSLLSPNLCTQRGTPSPPRPTLVSHPEPIFAKQMVYTLHHENHHLEQFLNQPSRKTENSGQKLECAENQGHISPDHSANSSLCGVNTSHIRSMGYPSMCGSNSNVDQVGMAARVTSESKHEEALFWQGGDSQRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRETDPFPVEIMATVSCLK 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63510774 63515408 - Sed0021704.1 Sed01g3441 702745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3441 644 Pfam CCT motif 585 627 IPR010402 GO:0005515(InterPro)
Sed01g3441 644 ProSiteProfiles CCT domain profile. 585 627 IPR010402 GO:0005515(InterPro)
Sed01g3441 644 ProSiteProfiles Response regulatory domain profile. 48 166 IPR001789 GO:0000160(InterPro)
Sed01g3441 644 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 245 IPR045279 GO:0009736(InterPro)
Sed01g3441 644 CDD psREC_PRR 49 152 - -
Sed01g3441 644 SUPERFAMILY CheY-like 41 172 IPR011006 -
Sed01g3441 644 SMART REC_2 47 162 IPR001789 GO:0000160(InterPro)
Sed01g3441 644 Pfam Response regulator receiver domain 49 160 IPR001789 GO:0000160(InterPro)
Sed01g3441 644 Gene3D - 45 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3441 Sed-Chr1:63510774 Sed03g1983 Sed-Chr3:13781527 1.70E-49 dispersed
Sed01g3441 Sed-Chr1:63510774 Sed05g0366 Sed-Chr5:2417260 7.60E-247 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37374 PF00072 Response_reg 3.70E-21 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3441 K12130 - csv:101209788 906.36