Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3461 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTTGAATCCAGCGACACCATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCCGATCAGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTGCCGATTACAACATCCAAAAAGAATCAACACTGCATCTGGTTCTGAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATCTGTCGCAAATGTTATGCACGCCTACATCCCCGAGCTGTCAACTGTAGGAAAAAGAAATGTGGACACAGCAATCAGGTAATGTATATTATCAATACGTTGATGGATTTTCATTCTCTGCTAAAATACATGATGTGCCAACAAATGTTTAATTTTCGTATCGCTGCTGAGCCAACTCGATGA 465 45.81 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQVMYIINTLMDFHSLLKYMMCQQMFNFRIAAEPTR 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63739491 63741553 + Sed0025557.1 Sed01g3461 702765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3461 154 Gene3D - 80 122 IPR038587 -
Sed01g3461 154 FunFam ubiquitin-60S ribosomal protein L40 79 125 - -
Sed01g3461 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sed01g3461 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sed01g3461 154 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed01g3461 154 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Sed01g3461 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sed01g3461 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sed01g3461 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sed01g3461 154 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Sed01g3461 154 Gene3D - 1 79 - -
Sed01g3461 154 PANTHER UBIQUITIN 1 99 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
Sed01g3461 154 Pfam Ribosomal L40e family 78 121 IPR001975 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed01g3461 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Sed01g3461 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515(InterPro)
Sed01g3461 154 CDD Ubl_ubiquitin 1 76 - -
Sed01g3461 154 SUPERFAMILY Zn-binding ribosomal proteins 76 119 IPR011332 GO:0006412(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3461 Sed-Chr1:63739491 Sed04g1515 Sed-Chr4:29978440 2.30E-64 dispersed
Sed01g3461 Sed-Chr1:63739491 Sed13g0036 Sed-Chr13:221162 2.30E-64 wgd
Sed01g3461 Sed-Chr1:63739491 Sed05g0382 Sed-Chr5:2604538 2.30E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3461 K02927 - csv:101209425 244.202