Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3463 ATGGGTTACGCGTCTCTCTCACTTCCCTCCACGCTTCTTCCACTCTCTTCACCTCTGCAAGCTCTTCCCAAAATCCCATTTCCGCTTCACTCTCTTTCAATTCCATCGAACCCACTTCCCACCAACAACCGGCTCGGTTCAAGGCCTCTTGCCTCCGCCGCCGCCGCCGCCGCCGCTATGACATCGGAGAGGAAGGTTTTTGATTCCGGTGAAGATTTGGCTGTTGCGCTAGCCAAATACACCGCCGATTTGTCCCATCACTTTGCCAACAACAGGGGTGCTTTCACTGTCGTTCTCTCCGGTGGATCTCTCATCAAATGCCTCAGGAAATTGGTGGAGCCACCCTATGTTGATTCAATAGACTGGTCAAAATGGCATGTGTTTTGGGTTGATGAGAGAGTTGTACCCAAGGATCACGTTGACAGCAACTACAAACTTGCTTTTGATGGGTTTCTCTCTCAGGTACCAATTCTCCCTGGTCATGTTTATGCTATCAATGATGCACTATCAGCTGAGGGTGCAGCTGAAGATTATGAAACATGTCTGAAGCATTTGGAGAATACCGAAGTGCTTGATGTCTCGGCTGCAAGCGGGTTCCCGAAATTTGATCTTATGCTTCTTGGTATGGGCCCAGATGGGCATGTGGCTTCTTTATTCCCAGGTCATCCCCTTCTCAATGAGAATCAGAAATGGGTTACCTTCATCAAGGATTCCCCAAAACCGCCCCCGGAGAGAATCACTTTCACCTTTCCTGTTATCAACTCATCGGCATACATCGCACTTGTGGTGCCCGGTGCTAGCAAAGCGGATGCCGTGTATACTGCACTAGGAGGAGGAAGCTCTGAGAATGCTGAAACATTACCTGTTCAGAGGGTTGCTCCTGAAGGGGCTTTGACATGGTTCTTGGACAAAGATGCTGCTTCCAAGCTGCAAATGTAA 939 49.41 MGYASLSLPSTLLPLSSPLQALPKIPFPLHSLSIPSNPLPTNNRLGSRPLASAAAAAAAMTSERKVFDSGEDLAVALAKYTADLSHHFANNRGAFTVVLSGGSLIKCLRKLVEPPYVDSIDWSKWHVFWVDERVVPKDHVDSNYKLAFDGFLSQVPILPGHVYAINDALSAEGAAEDYETCLKHLENTEVLDVSAASGFPKFDLMLLGMGPDGHVASLFPGHPLLNENQKWVTFIKDSPKPPPERITFTFPVINSSAYIALVVPGASKADAVYTALGGGSSENAETLPVQRVAPEGALTWFLDKDAASKLQM 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63748376 63751940 + Sed0008471.1 Sed01g3463 702767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3463 312 Gene3D - 56 311 - -
Sed01g3463 312 PANTHER 6-PHOSPHOGLUCONOLACTONASE 48 311 IPR039104 -
Sed01g3463 312 FunFam Probable 6-phosphogluconolactonase 59 311 - -
Sed01g3463 312 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 70 300 IPR006148 GO:0005975(InterPro)
Sed01g3463 312 NCBIfam 6-phosphogluconolactonase 66 310 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Sed01g3463 312 CDD 6PGL 71 302 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Sed01g3463 312 SUPERFAMILY NagB/RpiA/CoA transferase-like 65 310 IPR037171 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3463 Sed-Chr1:63748376 Sed06g1784 Sed-Chr6:42513313 4.20E-73 dispersed
Sed01g3463 Sed-Chr1:63748376 Sed05g0383 Sed-Chr5:2609794 4.20E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3463 K01057 - csv:101206872 495.738