Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3466 ATGGAGGATCACCCCGGAGGCGATGAAGTATTGTTGTCATCGACCGGAAAAGATGCCACGAACGATTTCGAAGATGTCGGGCACAGCGATTCAGCAAGAGAAATGATGGGCAAATATTACATAGGTGAAATTGATTCCTCAACAGTTCCTTTGAAGAAGATTTTCATTCCATCACAACAAACCCAGTACAAACAAGATAAGACACCTGAGTTTGTGTTAAAGATCTTGCAGATTCTGGTTCCCATTTTCGTTTTGGGTTTGGCCTTTGCTGTTCGACACTACACCAAGAATGAATGA 297 42.42 MEDHPGGDEVLLSSTGKDATNDFEDVGHSDSAREMMGKYYIGEIDSSTVPLKKIFIPSQQTQYKQDKTPEFVLKILQILVPIFVLGLAFAVRHYTKNE 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63773551 63776809 - Sed0001782.2 Sed01g3466 702770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3466 98 PRINTS Cytochrome B5 signature 32 44 IPR001199 -
Sed01g3466 98 PRINTS Cytochrome B5 signature 19 26 IPR001199 -
Sed01g3466 98 PRINTS Cytochrome B5 signature 4 18 IPR001199 -
Sed01g3466 98 Pfam Cytochrome b5-like Heme/Steroid binding domain 1 44 IPR001199 -
Sed01g3466 98 PANTHER CYTOCHROME B5 1 96 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed01g3466 98 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 1 51 IPR036400 -
Sed01g3466 98 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 45 IPR001199 -
Sed01g3466 98 Gene3D - 1 48 IPR036400 -
Sed01g3466 98 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3466 K23490 - - csv:101207109 181.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3466 Sed-Chr1:63773551 Sed05g0385 Sed-Chr5:2623399 1.80E-43 dispersed
Sed01g3465 Sed-Chr1:63773551 Sed01g3466 Sed-Chr1:63773551 3.30E-51 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156