Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3466 ATGGAGGATCACCCCGGAGGCGATGAAGTATTGTTGTCATCGACCGGAAAAGATGCCACGAACGATTTCGAAGATGTCGGGCACAGCGATTCAGCAAGAGAAATGATGGGCAAATATTACATAGGTGAAATTGATTCCTCAACAGTTCCTTTGAAGAAGATTTTCATTCCATCACAACAAACCCAGTACAAACAAGATAAGACACCTGAGTTTGTGTTAAAGATCTTGCAGATTCTGGTTCCCATTTTCGTTTTGGGTTTGGCCTTTGCTGTTCGACACTACACCAAGAATGAATGA 297 42.42 MEDHPGGDEVLLSSTGKDATNDFEDVGHSDSAREMMGKYYIGEIDSSTVPLKKIFIPSQQTQYKQDKTPEFVLKILQILVPIFVLGLAFAVRHYTKNE 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63773551 63776809 - Sed0001782.2 Sed01g3466 702770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3466 98 PRINTS Cytochrome B5 signature 32 44 IPR001199 -
Sed01g3466 98 PRINTS Cytochrome B5 signature 19 26 IPR001199 -
Sed01g3466 98 PRINTS Cytochrome B5 signature 4 18 IPR001199 -
Sed01g3466 98 Pfam Cytochrome b5-like Heme/Steroid binding domain 1 44 IPR001199 -
Sed01g3466 98 PANTHER CYTOCHROME B5 1 96 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed01g3466 98 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 1 51 IPR036400 -
Sed01g3466 98 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 45 IPR001199 -
Sed01g3466 98 Gene3D - 1 48 IPR036400 -
Sed01g3466 98 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3466 Sed-Chr1:63773551 Sed05g0385 Sed-Chr5:2623399 1.80E-43 dispersed
Sed01g3465 Sed-Chr1:63773551 Sed01g3466 Sed-Chr1:63773551 3.30E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3466 K23490 - csv:101207109 181.03