Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3493 ATGAACAACTACAACAAGCTCCACTCCGCCCGCTCGGGCGACGCTCCAACCCCGATCGACAATCCCCTACCCCCGCCGCCGTCCTCCCGCCGCCGCACCCGAACTCTCTTCATTTCCCTCCTCTCCATCCTCCTCATCACAGCCTCCGCGGTCTCGGCCGCGGTCCTCATCCACTCCCACATCTCGGCATCCAAACAGCCCCATTTCCCCAAAAACAAACCCACCCAAGCCATCTCCCGGGCCTGCAGCCTCACCCTCTACCCAACCCTATGCCTCTCCTCCCTCCTCTTCGACCCGACCGCGCTGACCGCGGACGTCAACGACCTCGTCCACATCTCCCTAAACCTCACACTCCAACACCTCACCAAGGCGCTCTACACCACCTCTCAAATCCCCACCTCCACCAATCCTCTCACCCTCTCCGCTTTCGAAGACTGCCTCGAGCTCCTAACCGACGCCGTCGACGCCTTCTCCCTCTCCCTCTCCTCCCCCACCGCCACCAACCACGACATCGTCACGTGGCTCAGTGCCGCCATGACGTACCACGACACGTGTGTCGATGGTTTCACCGACGTGGCTAACGACCCGGTCAAGGACCGGATGAAGGCCGGCCTGGGGGATTTGTCGGAGATGATTAGTAACTCCTTGGCGATTTTTTCCGGGTTTGGTGGGGGGTTGCCGGTGGAGAACCGGCGTCGGCGGTTGATGGAGATTGACGATGGGCGGTGGGCCGCGGAAGGGGAGTTTCCGACGTGGGTCAGTGGGAGTGATCGGCGGCTGTTGGCGGCCCCCATTTCGGCGATTCAGGCGGATATTGTGGTCGCGAAAGATGGGAGTGGGAAGTTCAAGACGGTGGCGGAGGCCATTGCGGCGGCGCCGTCGTCCAGTGGCCGACGGATCGTTATCTACATTAAGGCTGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAGACAAACTTGATGTTTGTGGGAGATGGGAAGGGTATAACCGTCATTTCAGGTGGAAAAAGCGTTTATGACGATGTTACCACTTTTCGTACAGCTACCTTTGCGGGTTCCGGAAGCGGGTTAATTCTACGAGACATGACGTTCGAGAATACGGCAGGGCCAAGCAAGCACCAAGCAGTAGCACTCCGCATAAGTGCGGACCATGCGGCGGTATACCGTTGCAACATCATTGGCTATCAAGACACACTCTATGTCCACTCGAACCGCCAATTCTTCCGAGAGTGCGACATCTACGGAACCGTAGACTTCATCTTCGGTAACGCCGTGGTCGTTTTCCAAAGCTGCAACATCTACGCTCGGAAGCCAATGGCCCAACAAAAGAACACCATCACAGCACAAAACCGAAAGGATCCGAATCAAAACACCGGAATCTCCATCCATGCTTGTAGGATCGTCGCCACCGCCGACCTCGAAGCTTCCAAGGGCTCTTTCCCGACCTTCCTCGGTCGGCCTTGGAAGTTGTACTCTAGAGTTGTTTACATGGTATCATCTATGGGGGACCACATTCATCCCCGAGGCTGGCTCGAGTGGCAAGGCTCTTTCGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCCGGGCCGGGTGCAGCTGTCGGGCAGCGGGTCAACTGGCCGGGTTATCGGGTCATTACTTCTACCCTTGAAGCTACCAAATTTACCGTTGGGCAGTTTATTTACGGCTCCTCGTGGTTACCTTCCACTGGCGTGTCGTTTTCTGCTGGATTATCTGCTAACTAA 1761 56.73 MNNYNKLHSARSGDAPTPIDNPLPPPPSSRRRTRTLFISLLSILLITASAVSAAVLIHSHISASKQPHFPKNKPTQAISRACSLTLYPTLCLSSLLFDPTALTADVNDLVHISLNLTLQHLTKALYTTSQIPTSTNPLTLSAFEDCLELLTDAVDAFSLSLSSPTATNHDIVTWLSAAMTYHDTCVDGFTDVANDPVKDRMKAGLGDLSEMISNSLAIFSGFGGGLPVENRRRRLMEIDDGRWAAEGEFPTWVSGSDRRLLAAPISAIQADIVVAKDGSGKFKTVAEAIAAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVYDDVTTFRTATFAGSGSGLILRDMTFENTAGPSKHQAVALRISADHAAVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRIVATADLEASKGSFPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVNWPGYRVITSTLEATKFTVGQFIYGSSWLPSTGVSFSAGLSAN 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64019311 64025518 - Sed0018706.1 Sed01g3493 702797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3493 586 FunFam Pectinesterase 265 583 - -
Sed01g3493 586 Pfam Pectinesterase 271 568 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed01g3493 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 220 IPR035513 -
Sed01g3493 586 PANTHER PECTINESTERASE 38 574 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed01g3493 586 Pfam Plant invertase/pectin methylesterase inhibitor 77 218 IPR006501 GO:0004857(InterPro)
Sed01g3493 586 SMART PMEI_2 73 218 IPR006501 GO:0004857(InterPro)
Sed01g3493 586 CDD PMEI-like_3 81 224 - -
Sed01g3493 586 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Sed01g3493 586 Gene3D - 265 583 IPR012334 -
Sed01g3493 586 NCBIfam pectinesterase inhibitor domain 51 219 IPR006501 GO:0004857(InterPro)
Sed01g3493 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 222 IPR035513 -
Sed01g3493 586 MobiDBLite consensus disorder prediction 1 30 - -
Sed01g3493 586 SUPERFAMILY Pectin lyase-like 266 582 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3493 Sed-Chr1:64019311 Sed07g0565 Sed-Chr7:4262324 1.10E-138 dispersed
Sed13g1545 Sed-Chr13:20633207 Sed01g3493 Sed-Chr1:64019311 9.30E-100 transposed
Sed01g3493 Sed-Chr1:64019311 Sed13g0067 Sed-Chr13:393264 5.80E-185 wgd
Sed01g3493 Sed-Chr1:64019311 Sed07g0850 Sed-Chr7:6228990 6.20E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3493 - - - 0.0