Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3501 ATGACTTATCTGCAGGAGAAGATTGTGAGGTTTCAAGACAGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCATCAGATAACACTTTAAACGCCGGAATGAATGGGACAAGAGCCGACTTAGTTTTAGAAAAGCCCCTCAAGGAATTGGAAACTGGTTCTTACAGGATTAACAGAATTAAGAAATCTTTCAAATCATCTTCTTTCAATAAATTTATGTCCACTGGATTTGAAACTGGAAAAAAAGTACTTGACCCACAGGGCCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCTATGGATCCTTTGTTCTTTTATGTCCCTGTGATGGATAACAATCAGAAATGTCTTGGGTTGGATAAGAAGATGGAGATTACGGCTAGCGTGCTACGCTCATTCACTGACATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTCGAAAATGCTTGGGAAATAGCAAAGAGATATCTGTCTTCATACTTTTTTATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATCATTGTTCCTAACATGAAAGGCTCAAGATCGTTGAATACCAAGGACTTGCTGAAATTTATTGTTTTCTTCCAGTATTTTCCACGGTTGATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGTGCATTCTGGTACTTGTTTTCCATAGAACGGGAAACTACATGCTGGCAGAAGGCTTGTCGTACCAATAATCAAATTGACTGTGCAAAATCACTATATTGTGATGTTGTTGATGTCAATCTACGAAATAACTCATTTTTAAACACTTCATGTCCTTTAGTGGATGGAGACGAAGACAAACCACCTTTTGATTTTGGAATATTTCTCGATGCTCTTAATTCTGGTGTCGTGGAATCGATGGACTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTATGGGAAATTTTGTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTTCTGTTTTCATTTCTCATCGGGAATATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCCGAGACCCTCCGGGAGCGAATCAGGAGGTACGAGCAGTACAAATGGCAGGAAACCAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCAAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGTTTGTCTCTGCTGATGAGGGTACCGATATTCGAAAAAATGGATGAACAACTGCTGGATGCTATGTGTGATCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTACATCGTAAGGGAAGGAGACCCTGTAGATGAAATGATCTTCATTATGCGAGGCAAGTTATTGTCTGTGACTACTAACGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGCTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCAACAAGAACCGTTCGAACTCTTTCGGAAGTTGAAGCTTTTGCTTTGAAGGCAGACGACTTAAAGTTTGTAGCTTCACAGTTCCGACGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCACAGCAATGGAGGACATGGGCAGCATGTTTTATACAAGCAGCATGGCGTCGATACCGAAGAAAGATGCACGAGCAGGCTCTCTTGGAAGAAGAGAACAGGTTGAAAGATGCATTGGCCAAGACAGGTGGAAGCTCTCCTAGTTTAGGCGCCACCATCTATGCATCCAGATTTGCAGCTAACATCCTCCGAACAATTCGACGCACAAGCTCAATTAAGACCAGGATGCCGATGCCGGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCTGATTTTACCTCTGAAGAGAATGGTTGA 2163 41.84 MTYLQEKIVRFQDRSSDKTSRGLYSSDNTLNAGMNGTRADLVLEKPLKELETGSYRINRIKKSFKSSSFNKFMSTGFETGKKVLDPQGPFLQKWNKIFVLSCVIAVSMDPLFFYVPVMDNNQKCLGLDKKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVENAWEIAKRYLSSYFFIDILAVLPLPQVVILIIVPNMKGSRSLNTKDLLKFIVFFQYFPRLIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQKACRTNNQIDCAKSLYCDVVDVNLRNNSFLNTSCPLVDGDEDKPPFDFGIFLDALNSGVVESMDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEILFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPETLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKMHEQALLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSIKTRMPMPERIPPMLLQKPAEPDFTSEENG 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64132152 64139412 - Sed0019004.1 Sed01g3501 702805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3501 720 Gene3D Helix hairpin bin 414 479 - -
Sed01g3501 720 SUPERFAMILY cAMP-binding domain-like 417 610 IPR018490 -
Sed01g3501 720 Coils Coil 640 660 - -
Sed01g3501 720 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Sed01g3501 720 SMART cnmp_10 488 619 IPR000595 -
Sed01g3501 720 Pfam Ion transport protein 94 415 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3501 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 694 - -
Sed01g3501 720 CDD CAP_ED 488 619 IPR000595 -
Sed01g3501 720 Pfam Cyclic nucleotide-binding domain 509 600 IPR000595 -
Sed01g3501 720 Gene3D Jelly Rolls 486 606 IPR014710 -
Sed01g3501 720 SUPERFAMILY Voltage-gated potassium channels 85 410 - -
Sed01g3501 720 FunFam Cyclic nucleotide-gated ion channel 1 486 604 - -
Sed01g3501 720 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Sed01g3501 720 Gene3D - 95 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3501 Sed-Chr1:64132152 Sed05g0423 Sed-Chr5:2835168 0.00E+00 dispersed
Sed01g3501 Sed-Chr1:64132152 Sed01g3502 Sed-Chr1:64132152 0.00E+00 tandem
Sed08g2022 Sed-Chr8:34506742 Sed01g3501 Sed-Chr1:64132152 7.80E-113 transposed
Sed01g3501 Sed-Chr1:64132152 Sed13g0079 Sed-Chr13:510575 5.90E-248 wgd
Sed01g3501 Sed-Chr1:64132152 Sed05g0422 Sed-Chr5:2835168 0.00E+00 wgd
Sed01g3501 Sed-Chr1:64132152 Sed07g0823 Sed-Chr7:6066666 3.30E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3501 K05391 - csv:101221781 1281.54