Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3502 ATGTTTCAAGACAGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCATCAGATAACACTTTAAACGCCGGAATGAATGGGACAAGAGCCGACTTAGTTTTAGAAAAGCCCCTCAAGGAATTGGAAACTGGTTCTTACAGGATTAACAGAATTAAGAAATCTTTCAAATCATCTTCTTTCAATAAATTTATGTCCACTGGATTTGAAACTGGAAAAAAAGTACTTGACCCACAGGGCCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCTATGGATCCTTTGTTCTTTTATGTCCCTGTGATGGATAACAATCAGAAATGTCTTGGGTTGGATAAGAAGATGGAGATTACGGCTAGCGTGCTACGCTCATTCACTGACATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTCGAAAATGCTTGGGAAATAGCAAAGAGATATCTGTCTTCATACTTTTTTATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATCATTGTTCCTAACATGAAAGGCTCAAGATCGTTGAATACCAAGGACTTGCTGAAATTTATTGTTTTCTTCCAGTATTTTCCACGGTTGATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGTGCATTCTGGTACTTGTTTTCCATAGAACGGGAAACTACATGCTGGCAGAAGGCTTGTCGTACCAATAATCAAATTGACTGTGCAAAATCACTATATTGTGATGTTGTTGATGTCAATCTACGAAATAACTCATTTTTAAACACTTCATGTCCTTTAGTGGATGGAGACGAAGACAAACCACCTTTTGATTTTGGAATATTTCTCGATGCTCTTAATTCTGGTGTCGTGGAATCGATGGACTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTATGGGAAATTTTGTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTTCTGTTTTCATTTCTCATCGGGAATATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCCGAGACCCTCCGGGAGCGAATCAGGAGGTACGAGCAGTACAAATGGCAGGAAACCAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCAAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGTTTGTCTCTGCTGATGAGGGTACCGATATTCGAAAAAATGGATGAACAACTGCTGGATGCTATGTGTGATCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTACATCGTAAGGGAAGGAGACCCTGTAGATGAAATGATCTTCATTATGCGAGGCAAGTTATTGTCTGTGACTACTAACGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGCTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCAACAAGAACCGTTCGAACTCTTTCGGAAGTTGAAGCTTTTGCTTTGAAGGCAGACGACTTAAAGTTTGTAGCTTCACAGTTCCGACGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCACAGCAATGGAGGACATGGGCAGCATGTTTTATACAAGCAGCATGGCGTCGATACCGAAGAAAGATGCACGAGCAGGCTCTCTTGGAAGAAGAGAACAGGTTGAAAGATGCATTGGCCAAGACAGGTGGAAGCTCTCCTAGTTTAGGCGCCACCATCTATGCATCCAGATTTGCAGCTAACATCCTCCGAACAATTCGACGCACAAGCTCAATTAAGACCAGGATGCCGATGCCGGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCTGATTTTACCTCTGAAGAGAATGGTTGA 2136 41.81 MFQDRSSDKTSRGLYSSDNTLNAGMNGTRADLVLEKPLKELETGSYRINRIKKSFKSSSFNKFMSTGFETGKKVLDPQGPFLQKWNKIFVLSCVIAVSMDPLFFYVPVMDNNQKCLGLDKKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVENAWEIAKRYLSSYFFIDILAVLPLPQVVILIIVPNMKGSRSLNTKDLLKFIVFFQYFPRLIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQKACRTNNQIDCAKSLYCDVVDVNLRNNSFLNTSCPLVDGDEDKPPFDFGIFLDALNSGVVESMDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEILFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPETLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKMHEQALLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSIKTRMPMPERIPPMLLQKPAEPDFTSEENG 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64132152 64138415 - Sed0019004.2 Sed01g3502 702806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3502 711 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g3502 711 CDD CAP_ED 479 610 IPR000595 -
Sed01g3502 711 Pfam Ion transport protein 85 406 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3502 711 ProSiteProfiles cAMP/cGMP binding motif profile. 479 563 IPR000595 -
Sed01g3502 711 SUPERFAMILY cAMP-binding domain-like 408 601 IPR018490 -
Sed01g3502 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 685 - -
Sed01g3502 711 Gene3D - 86 403 - -
Sed01g3502 711 Gene3D Helix hairpin bin 405 470 - -
Sed01g3502 711 Coils Coil 631 651 - -
Sed01g3502 711 SMART cnmp_10 479 610 IPR000595 -
Sed01g3502 711 Pfam Cyclic nucleotide-binding domain 500 591 IPR000595 -
Sed01g3502 711 FunFam Cyclic nucleotide-gated ion channel 1 406 470 - -
Sed01g3502 711 FunFam Cyclic nucleotide-gated ion channel 1 477 595 - -
Sed01g3502 711 SUPERFAMILY Voltage-gated potassium channels 76 401 - -
Sed01g3502 711 Gene3D Jelly Rolls 477 597 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3502 Sed-Chr1:64132152 Sed05g0422 Sed-Chr5:2835168 0.00E+00 dispersed
Sed01g3501 Sed-Chr1:64132152 Sed01g3502 Sed-Chr1:64132152 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3502 K05391 - csv:101221781 1262.67