Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3516 ATGAGCTTCAAAAGGGACATTGAGCTTGTCGTCTTTGTTTTCTCTTTCGTCTTCTTGTTTGCAGCACATTTATATCCAGTCATGTCAGAGCCTATCAAAGACAAAGAAGCTTTGTTTAATTTTCTCAACAAGATGGATCACTCACACTCGCTCAATTGGAAGAAGAGCACTTCTTTGTGCAAAGAATGGATGGGAGTTCAATGCAACAATGATGAATCCCAAGTTATAGCTCTTCGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCAATCAACACTCTCGGTCGTCTATCGGGACTCGAAACTTTAAGCCTTGGATCGAATTACATATCAGGCCCTTTCCCTCCTGACTTCCTAAAGCTGAGAAATCTCAGCTCACTCTACTTACAAAACAACAAGTTTTTTGGTCCATTGCCATTGGATTTTGCAGTGTGGAAGAATCTCAACATCATTGATTTGTCAAACAATGCCTTCAATGGAAGCTTCCCTCGCTCGATTTCGAAGATTACGTGTATAACGACATTAAAGCTTGCCAATAACTCACTCTCTGGTGAGATTCCAGACCTCCAACTTCCTAGTCTGCAAGAGTTGGATCTTTCAAACAACAATCTAACAGGGTATATCCCTCAGTCCCTTAAAAGATTTCCAAGTTGGGCATTCTACGGTAACAACCTCATGCTCGAAAGTGCCAATCTTCCAGCTCGGCTTGGACCATCGCCCAATGTGCAACCGTTGAAGAAAGGCACAGCATCACTTGGTGAAGCAGCAATTCTAGGCATTATAATTGGAGGTTCTGCAACGGGGTTAGTTGTAGCAGCCATTTTAATGGTTATGTGCTGCTCAAACAGAGGAAGAATAAAATCCAAACCCTCATCAAAACTAAATAGGCAAGAACTTTATGTGAATAAAAGGGCGTCTGAGACACAAAGCAACAACCTCAAATTTTTTCAGAGTCCCAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCGTCTTCCGAGGTGCTCGGGAAGGGGACATCAGGGACGACGTATAAGGCGACGTTGGAAGACTGTAATACAGTTACAGTGAAGAGATTGAAGGAAGTGTGTGTTTCAAAGAAGGAATTTGAGCAGCAGATGGAGGTGCTTGGGAGCATTGAACATGAAAATGTGTGTGCTTTGAGGGCATATTATTATTCAAAGGATGAGAAACTCATGGTCTTTGACTTCTACCAACATGGAAGTGTTTCTGCAATGTTACATGTTGCAAGAGAGAAAAATGGATCCCCACTAGACTGGGAAACTCGGCTACGAATCGCCATAGGCGCAGCCAGAGGAATCGCTCACATCCACTCAGAAAGCTGCGCCAAAATCGTCCATGGCAACATCAAGGCCTCAAACATCTTCCTCAACTCCGCCGGCGACGGCTGCATCTCCGACGTCGGCGTCGCCGCTCTCATGAACCTCATGGCGCCGCCGGCCACCAGAGCCGCCGGATACCGCGCTCCCGAACTCAAAGACTCTCGCAAGGCGTCTCAATCCTCCGACACCTACAGCTTCGGCGTCGTCCTCCTCGAACTCCTCACCGGCAAATTTCCTCTCCACACGAAGGGCGGCGGCGATCAGATCATCCACCTTGTGCGGTGGGTGAACGCGGTGGTCCGAGAGGAGTGGACGGCGGAGGTGTTCGATGTGGAGCTTTTGAGGTTTCCGAACATAGAGGAGGAGATGTTGGAGGCGCTGCAAATTGCGCTGTCTTGTGTAGGGAAAGTTCCGGAGGATCGGCCGGCGATGGCGGATGTGGCGGCGCGTTTGGAGGGCGTTCGCCCGGTGAGCGGCGGAGAAAACCTATCGCCGCCGCCTCCGCCTCCGCCTCCGCCGGTACTGGAACGTGGAGCGGAGGATGTGATCCAGATTCAGGCGAATGTGGGTGAGGGTGAAGGTGAAGGTGAAGCTTCGTCGAAATCGAATTGA 1956 48.98 MSFKRDIELVVFVFSFVFLFAAHLYPVMSEPIKDKEALFNFLNKMDHSHSLNWKKSTSLCKEWMGVQCNNDESQVIALRLAEVGLHGSIPINTLGRLSGLETLSLGSNYISGPFPPDFLKLRNLSSLYLQNNKFFGPLPLDFAVWKNLNIIDLSNNAFNGSFPRSISKITCITTLKLANNSLSGEIPDLQLPSLQELDLSNNNLTGYIPQSLKRFPSWAFYGNNLMLESANLPARLGPSPNVQPLKKGTASLGEAAILGIIIGGSATGLVVAAILMVMCCSNRGRIKSKPSSKLNRQELYVNKRASETQSNNLKFFQSPSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDCNTVTVKRLKEVCVSKKEFEQQMEVLGSIEHENVCALRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKNGSPLDWETRLRIAIGAARGIAHIHSESCAKIVHGNIKASNIFLNSAGDGCISDVGVAALMNLMAPPATRAAGYRAPELKDSRKASQSSDTYSFGVVLLELLTGKFPLHTKGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRFPNIEEEMLEALQIALSCVGKVPEDRPAMADVAARLEGVRPVSGGENLSPPPPPPPPPVLERGAEDVIQIQANVGEGEGEGEASSKSN 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64263226 64268848 - Sed0012707.2 Sed01g3516 702820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3516 651 Gene3D Ribonuclease Inhibitor 190 235 IPR032675 -
Sed01g3516 651 FunFam Probable inactive receptor kinase RLK902 31 190 - -
Sed01g3516 651 PANTHER OS05G0588300 PROTEIN 13 608 IPR050994 -
Sed01g3516 651 MobiDBLite consensus disorder prediction 603 629 - -
Sed01g3516 651 Pfam Leucine Rich Repeat 123 143 IPR001611 GO:0005515(InterPro)
Sed01g3516 651 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Sed01g3516 651 Pfam Leucine Rich Repeat 100 121 IPR001611 GO:0005515(InterPro)
Sed01g3516 651 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Sed01g3516 651 MobiDBLite consensus disorder prediction 609 624 - -
Sed01g3516 651 Gene3D Transferase(Phosphotransferase) domain 1 406 607 - -
Sed01g3516 651 SUPERFAMILY L domain-like 47 217 - -
Sed01g3516 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 405 609 - -
Sed01g3516 651 PRINTS Leucine-rich repeat signature 191 204 - -
Sed01g3516 651 PRINTS Leucine-rich repeat signature 148 161 - -
Sed01g3516 651 Gene3D Phosphorylase Kinase; domain 1 296 404 - -
Sed01g3516 651 ProSiteProfiles Protein kinase domain profile. 330 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3516 651 SUPERFAMILY Protein kinase-like (PK-like) 334 618 IPR011009 -
Sed01g3516 651 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Sed01g3516 651 Pfam Protein kinase domain 333 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3516 651 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Sed01g3516 651 FunFam pollen receptor-like kinase 1 300 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3516 Sed-Chr1:64263226 Sed01g3518 Sed-Chr1:64263226 2.0e-311 dispersed
Sed01g3515 Sed-Chr1:64263226 Sed01g3516 Sed-Chr1:64263226 2.0e-311 tandem
Sed01g3516 Sed-Chr1:64263226 Sed01g3517 Sed-Chr1:64263226 2.0e-311 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78721 PF00069 Pkinase 1.70E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3516 - - - 0.0