Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3551 ATGGCCGCCGGCGACAACAATTGGGATCTCTCCGCCGTCGTCCGTAGCTGCAATTCAGCCTCCTCCACCGCCGCCGCCGCAGACACCGCCCTGTCTTGTCTCGCTTCTTTGACTTTCGACGACCACGACCCGAACGACGACGGCGTCGCATTCTCCTTTTCCGACATCTTTCAACCCCAACTCCCCAACGGATTCCATGAGCTTCACCAAGCCTTCATCTCATTTCTTCCCAACTCCGCCGCCGCCACCGCCGCCGTCTCCGCCGCCGTGCCGGAATCACCCAACCGCCATTTCCGGCAGGAAAATAAACCCATTCGGCAGGAGCCGGATCCTGGCCCGGCGGGGCAATTCCGGCAGCCGCCGTGCCCGCCGGAGATTCCAAATCCAGCAATGGCGCATTCTCACGTACCCAAATCGAGAAAAAGAAAGAATCAACAGAAGAGAACCGTATGCCATGTTACTGCGGATAATCTCTCGACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGGTCCCCATACCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGATGTGGGGCAAGAAAGCAAGTTGAACGGAGCAATGCCGATCCGGACACTTTCATCATCACATACACCGGAGATCACACTCATCCACGTCCAACTCACCGGAATTCCCTCGCCGGGAGTTCCCGAAACCGGTCCTCGACATCGTCGATCCCATCCAAAAACCAACCAACGGGAGATCCCAATTCCTCCTCGCCGGCAGCCAATGCCACTATGGGCTCAAACTCCTCCCCCGCAGCCTCTCCGATAACATCGCTTAACGACGACGGTGGAGGCGAGAAAGAGGGAGATCAGATGTTTGAGGATATGACCATTGACAGCAATGACGACGACGACGAAAATGATATTTTGATTCCAAACTTGACCGTGAGAGATGACATCTTTGTTGGCTTTCAAGAGCTTGGTTATAGCTCTCGAAACCGGTCGTTGTAG 996 54.82 MAAGDNNWDLSAVVRSCNSASSTAAAADTALSCLASLTFDDHDPNDDGVAFSFSDIFQPQLPNGFHELHQAFISFLPNSAAATAAVSAAVPESPNRHFRQENKPIRQEPDPGPAGQFRQPPCPPEIPNPAMAHSHVPKSRKRKNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPDTFIITYTGDHTHPRPTHRNSLAGSSRNRSSTSSIPSKNQPTGDPNSSSPAANATMGSNSSPAASPITSLNDDGGGEKEGDQMFEDMTIDSNDDDDENDILIPNLTVRDDIFVGFQELGYSSRNRSL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64686107 64688102 - Sed0003967.1 Sed01g3551 702855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3551 331 MobiDBLite consensus disorder prediction 186 286 - -
Sed01g3551 331 SUPERFAMILY WRKY DNA-binding domain 154 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g3551 331 MobiDBLite consensus disorder prediction 87 150 - -
Sed01g3551 331 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g3551 331 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 320 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed01g3551 331 SMART WRKY_cls 159 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g3551 331 MobiDBLite consensus disorder prediction 114 130 - -
Sed01g3551 331 FunFam WRKY transcription factor 22 142 213 - -
Sed01g3551 331 MobiDBLite consensus disorder prediction 222 272 - -
Sed01g3551 331 Gene3D WRKY domain 142 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g3551 331 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3551 Sed-Chr1:64686107 Sed02g1648 Sed-Chr2:51786030 2.10E-38 dispersed
Sed01g3551 Sed-Chr1:64686107 Sed12g0173 Sed-Chr12:990905 9.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37385 PF03106 WRKY 1.00E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3551 - - - 0.0