Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3577 | ATGTCTCCATGGTGGGGAAAGTCATCAACAAAAGAAGCAAAGAAGAGCAAGGAAAGTCTTATTGACACATTGCAGAGAAAGCTTAGATCCTCAGATAGTAAAACAAACAACAAATCAGGAGGGTCTCCAAGAAATTGTAATGATACAATTTCTGAGCAAGGATCGAGACCAGTTTCACCTTCAAAACAAGTTTCAAGGTGTCAAAGCTTTTCTGGAAGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCGCCAATTGTAGGTCTTATAGACTCTAGAATTAGTATTCCGCCAAAACCAAGATCTGAAAGGGGCTCCACACCATCATTATATCTACCGCTCCCAAGACCACCATGCATTGTCGGGAGACCAAACCATTCCAATGTGGATGCTGATAATGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAATAGATAGCACAGATCCACAAGATTCACGAAGTCGCAGTCCTCAGTCTACTGACTATGATATTGGGACTAAAACTGTTCCATACAGTCCTTCCAGTGTCATTGTCAAGGACCGGTCTTCTATTCTCACTCCACCAAGTTCACAAGAGCGCAGAAATGCAACAAACATCTCATTGAGCAACCACATTTTCTCCACATCACCCAAGCGAAGGCTTTTAAGCAGTCATGTTCCAAATAATCTGCAAGTTCCATATCATGGGAATTTATACATTGCTCCAGACAGTTCGATGTCTAGTCCTTCTAGAAGTCCCATAAGGGCTTTTAGCACTGAGCAAGTTAATAATAATGTTGTTAATGCTGGAAAGTTCTATATGGATCTCCCTTTTCCTGGATCAGGTCAATGCTCTAGTCCTGGTTCTGGTTACAATTCTGGGCATAATTCTATGGGTGGTGATTTATCAGGGCAGTTATTTTGGCAACAAAGCCAGGGTAGCCCAGAATATTCACCAGCACCTAGTCCCAGAATGACCAGCCCTGGCCCCAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGAGCAGGAGGGATACCAATTGAGTCACAGACAAGCTGGGCGGATGAGAAGCAAACTCACCGCTTACCTCTACCTCCAGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCAGCTAGCTTAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGTAGTTTTGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAGTTGATGCAGGAAATTACCTTGTTGAGTCGTTTACGGCATCCAAATATTGTGATGTATCATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTGCTCCAGGAATATGGACAGCTTGGAGAATCGGCACTTCGTAGTTATACTCAGCAAATACTGTCCGGGCTTGCATACTTGCATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATATACTTGTTGATCCCACCGGGCGTGTTAAGTTGGCTGACTTTGGCATGGCAAAACATATCACTGGGCAATCATGCCCTTTGTCTTTCAAAGGCAGCCCGTACTGGATGGCTCCTGAGGTTATAAAGAACTCCGATGGTTGTAACCTTCCGGTGGATATTTGGAGTCTGGGATGCACTGTTTTGGAGATGGCAACGACAAAACCTCCTTGGAGTCAATATGAAGGAATTGCTGCAATGTTTAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGATCACCTTTCACACGATGGAAAAGACTTCGTTAGACAATGTCTGCAACGAAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATCCTTTTGTCAAACATGCTGCACCTCTTGAAAGACCGATTTTGGGTTCTGAACATTCAGATCCAACTCCAGGAATTACAAATGGTGTAAGAAATCTGGGTATTGAGCCAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTTATTCATCCAGACTCTCAACAGCTATTTTTCATTCCAGTGAAATCCATATCGCGAGGAATCTTTCATGTCCTGTTTCACCCATTGGAAGCCCTCTGGCGCACTTACGATCACCACAACATACCAGTGGAAGAATGACTCCATCGCCCATCGCTAGCCCTCGGAACTTGTCGGGCGCATCCACTCCTCTCACAGGAGGAGGTGGTGCTATACCACACCAGCACCTCAAACAATCATTGTACCTACAGGAGGGTTTTGGGAGCTTGCCAAAACCTTCAATAGGTCACTATAGTAATGGCCCTTCCTACCACGAAACAAATCCTGACATCTTTCAGGGGATTCAGCCTGGTTCTCACATCTTCTCTGAGCAATTTGGAAAGCCTGCCTGGGAATCGTATGACGGGCAGGCAGTCTTGGCTGATCGTGTTTCTAGGCAGCTACTGAGTGACCACATAACAACTCCCTCTCTGGATTTAAGTCCGAGCTCACTCTTGACGAACCGCAGATAG | 2622 | 45.5 | MSPWWGKSSTKEAKKSKESLIDTLQRKLRSSDSKTNNKSGGSPRNCNDTISEQGSRPVSPSKQVSRCQSFSGRPQAQPLPLPGVQPPIVGLIDSRISIPPKPRSERGSTPSLYLPLPRPPCIVGRPNHSNVDADNGVGSVSSESSIDSTDPQDSRSRSPQSTDYDIGTKTVPYSPSSVIVKDRSSILTPPSSQERRNATNISLSNHIFSTSPKRRLLSSHVPNNLQVPYHGNLYIAPDSSMSSPSRSPIRAFSTEQVNNNVVNAGKFYMDLPFPGSGQCSSPGSGYNSGHNSMGGDLSGQLFWQQSQGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPIESQTSWADEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASLGSRWKKGKLLGRGSFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVMYHGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSDGCNLPVDIWSLGCTVLEMATTKPPWSQYEGIAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKHAAPLERPILGSEHSDPTPGITNGVRNLGIEPGRNPSFLDSDRSAAYSSRLSTAIFHSSEIHIARNLSCPVSPIGSPLAHLRSPQHTSGRMTPSPIASPRNLSGASTPLTGGGGAIPHQHLKQSLYLQEGFGSLPKPSIGHYSNGPSYHETNPDIFQGIQPGSHIFSEQFGKPAWESYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRR | 873 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 64904234 | 64911517 | - | Sed0002475.1 | Sed01g3577 | 702881 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 278 | 315 | - | - | |
Sed01g3577 | 873 | SMART | serkin_6 | 402 | 658 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3577 | 873 | CDD | STKc_MEKK1_plant | 401 | 658 | - | - | |
Sed01g3577 | 873 | Pfam | Protein kinase domain | 403 | 658 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 278 | 345 | - | - | |
Sed01g3577 | 873 | ProSitePatterns | Protein kinases ATP-binding region signature. | 408 | 431 | IPR017441 | GO:0005524(InterPro) | |
Sed01g3577 | 873 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 34 | 663 | IPR050538 | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 1 | 177 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 370 | 388 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 10 | 33 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 740 | 767 | - | - | |
Sed01g3577 | 873 | ProSiteProfiles | Protein kinase domain profile. | 402 | 658 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3577 | 873 | SUPERFAMILY | Protein kinase-like (PK-like) | 400 | 730 | IPR011009 | - | |
Sed01g3577 | 873 | Gene3D | Transferase(Phosphotransferase) domain 1 | 400 | 675 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 669 | 696 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 737 | 776 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 34 | 75 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 132 | 177 | - | - | |
Sed01g3577 | 873 | FunFam | Mitogen-activated protein kinase kinase kinase | 400 | 682 | - | - | |
Sed01g3577 | 873 | MobiDBLite | consensus disorder prediction | 364 | 401 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3577 | Sed-Chr1:64904234 | Sed05g0486 | Sed-Chr5:3351227 | 0.00E+00 | dispersed | |
Sed12g1111 | Sed-Chr12:7271380 | Sed01g3577 | Sed-Chr1:64904234 | 1.00E-32 | dispersed | |
Sed01g3577 | Sed-Chr1:64904234 | Sed05g0485 | Sed-Chr5:3351227 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78724 | PF00069 | Pkinase | 1.20E-70 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3577 | K20717 | - | csv:101222716 | 1524.22 |