Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3577 ATGTCTCCATGGTGGGGAAAGTCATCAACAAAAGAAGCAAAGAAGAGCAAGGAAAGTCTTATTGACACATTGCAGAGAAAGCTTAGATCCTCAGATAGTAAAACAAACAACAAATCAGGAGGGTCTCCAAGAAATTGTAATGATACAATTTCTGAGCAAGGATCGAGACCAGTTTCACCTTCAAAACAAGTTTCAAGGTGTCAAAGCTTTTCTGGAAGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCGCCAATTGTAGGTCTTATAGACTCTAGAATTAGTATTCCGCCAAAACCAAGATCTGAAAGGGGCTCCACACCATCATTATATCTACCGCTCCCAAGACCACCATGCATTGTCGGGAGACCAAACCATTCCAATGTGGATGCTGATAATGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAATAGATAGCACAGATCCACAAGATTCACGAAGTCGCAGTCCTCAGTCTACTGACTATGATATTGGGACTAAAACTGTTCCATACAGTCCTTCCAGTGTCATTGTCAAGGACCGGTCTTCTATTCTCACTCCACCAAGTTCACAAGAGCGCAGAAATGCAACAAACATCTCATTGAGCAACCACATTTTCTCCACATCACCCAAGCGAAGGCTTTTAAGCAGTCATGTTCCAAATAATCTGCAAGTTCCATATCATGGGAATTTATACATTGCTCCAGACAGTTCGATGTCTAGTCCTTCTAGAAGTCCCATAAGGGCTTTTAGCACTGAGCAAGTTAATAATAATGTTGTTAATGCTGGAAAGTTCTATATGGATCTCCCTTTTCCTGGATCAGGTCAATGCTCTAGTCCTGGTTCTGGTTACAATTCTGGGCATAATTCTATGGGTGGTGATTTATCAGGGCAGTTATTTTGGCAACAAAGCCAGGGTAGCCCAGAATATTCACCAGCACCTAGTCCCAGAATGACCAGCCCTGGCCCCAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGAGCAGGAGGGATACCAATTGAGTCACAGACAAGCTGGGCGGATGAGAAGCAAACTCACCGCTTACCTCTACCTCCAGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCAGCTAGCTTAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGTAGTTTTGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAGTTGATGCAGGAAATTACCTTGTTGAGTCGTTTACGGCATCCAAATATTGTGATGTATCATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTGCTCCAGGAATATGGACAGCTTGGAGAATCGGCACTTCGTAGTTATACTCAGCAAATACTGTCCGGGCTTGCATACTTGCATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATATACTTGTTGATCCCACCGGGCGTGTTAAGTTGGCTGACTTTGGCATGGCAAAACATATCACTGGGCAATCATGCCCTTTGTCTTTCAAAGGCAGCCCGTACTGGATGGCTCCTGAGGTTATAAAGAACTCCGATGGTTGTAACCTTCCGGTGGATATTTGGAGTCTGGGATGCACTGTTTTGGAGATGGCAACGACAAAACCTCCTTGGAGTCAATATGAAGGAATTGCTGCAATGTTTAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGATCACCTTTCACACGATGGAAAAGACTTCGTTAGACAATGTCTGCAACGAAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATCCTTTTGTCAAACATGCTGCACCTCTTGAAAGACCGATTTTGGGTTCTGAACATTCAGATCCAACTCCAGGAATTACAAATGGTGTAAGAAATCTGGGTATTGAGCCAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTTATTCATCCAGACTCTCAACAGCTATTTTTCATTCCAGTGAAATCCATATCGCGAGGAATCTTTCATGTCCTGTTTCACCCATTGGAAGCCCTCTGGCGCACTTACGATCACCACAACATACCAGTGGAAGAATGACTCCATCGCCCATCGCTAGCCCTCGGAACTTGTCGGGCGCATCCACTCCTCTCACAGGAGGAGGTGGTGCTATACCACACCAGCACCTCAAACAATCATTGTACCTACAGGAGGGTTTTGGGAGCTTGCCAAAACCTTCAATAGGTCACTATAGTAATGGCCCTTCCTACCACGAAACAAATCCTGACATCTTTCAGGGGATTCAGCCTGGTTCTCACATCTTCTCTGAGCAATTTGGAAAGCCTGCCTGGGAATCGTATGACGGGCAGGCAGTCTTGGCTGATCGTGTTTCTAGGCAGCTACTGAGTGACCACATAACAACTCCCTCTCTGGATTTAAGTCCGAGCTCACTCTTGACGAACCGCAGATAG 2622 45.5 MSPWWGKSSTKEAKKSKESLIDTLQRKLRSSDSKTNNKSGGSPRNCNDTISEQGSRPVSPSKQVSRCQSFSGRPQAQPLPLPGVQPPIVGLIDSRISIPPKPRSERGSTPSLYLPLPRPPCIVGRPNHSNVDADNGVGSVSSESSIDSTDPQDSRSRSPQSTDYDIGTKTVPYSPSSVIVKDRSSILTPPSSQERRNATNISLSNHIFSTSPKRRLLSSHVPNNLQVPYHGNLYIAPDSSMSSPSRSPIRAFSTEQVNNNVVNAGKFYMDLPFPGSGQCSSPGSGYNSGHNSMGGDLSGQLFWQQSQGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPIESQTSWADEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASLGSRWKKGKLLGRGSFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVMYHGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSDGCNLPVDIWSLGCTVLEMATTKPPWSQYEGIAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKHAAPLERPILGSEHSDPTPGITNGVRNLGIEPGRNPSFLDSDRSAAYSSRLSTAIFHSSEIHIARNLSCPVSPIGSPLAHLRSPQHTSGRMTPSPIASPRNLSGASTPLTGGGGAIPHQHLKQSLYLQEGFGSLPKPSIGHYSNGPSYHETNPDIFQGIQPGSHIFSEQFGKPAWESYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRR 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64904234 64911517 - Sed0002475.1 Sed01g3577 702881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3577 873 MobiDBLite consensus disorder prediction 278 315 - -
Sed01g3577 873 SMART serkin_6 402 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3577 873 CDD STKc_MEKK1_plant 401 658 - -
Sed01g3577 873 Pfam Protein kinase domain 403 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3577 873 MobiDBLite consensus disorder prediction 278 345 - -
Sed01g3577 873 ProSitePatterns Protein kinases ATP-binding region signature. 408 431 IPR017441 GO:0005524(InterPro)
Sed01g3577 873 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 34 663 IPR050538 -
Sed01g3577 873 MobiDBLite consensus disorder prediction 1 177 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 370 388 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 10 33 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 740 767 - -
Sed01g3577 873 ProSiteProfiles Protein kinase domain profile. 402 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3577 873 SUPERFAMILY Protein kinase-like (PK-like) 400 730 IPR011009 -
Sed01g3577 873 Gene3D Transferase(Phosphotransferase) domain 1 400 675 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 669 696 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 737 776 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 34 75 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 132 177 - -
Sed01g3577 873 FunFam Mitogen-activated protein kinase kinase kinase 400 682 - -
Sed01g3577 873 MobiDBLite consensus disorder prediction 364 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3577 Sed-Chr1:64904234 Sed05g0486 Sed-Chr5:3351227 0.00E+00 dispersed
Sed12g1111 Sed-Chr12:7271380 Sed01g3577 Sed-Chr1:64904234 1.00E-32 dispersed
Sed01g3577 Sed-Chr1:64904234 Sed05g0485 Sed-Chr5:3351227 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78724 PF00069 Pkinase 1.20E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3577 K20717 - csv:101222716 1524.22