Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3583 ATGAAAAAGAAGAAGCTTAGTTCAACATTTGAGTCTTCTCAAATTACCCACAACATACATCCAATCCTCTTTCCTTATTTTTCTCGGTGGCAAACTATCTACGGGAAAATATTTACATATTGGTTGGGAACAGAGAAGGTGAAGAAATTGTGGACCGAAGTGAATGCTAAGCAGTGGGGAAAGCCACGTGTATTCAGACGTGACAGGAAATCCATGTTTGGAAATGGTTTATTGATGGCCGAAGGAGATGACTGGGCTCGCCAAAGACACGTCATTACTCCTGCATTTAATCCTTCCAATTTACTCGCAATGGCAAGCTTAATGGTGGACAAATGGGGCAACCTCGTACGGTGGGGCCACGCACAAATCGAAGTGGAAAAAGAAATCACATCCACTGCCGGAGAAATCATCGCCACAACCAGCTTCGGACAAATTCTTGGTCATAAAGTTTGTGAATTTGATTTCATCAACCTTCCTCAACTTAAAAAGATGGAATGGGTGATGAGTGAGGTTCTACGTCTTTACCCTACGGCACCAAACGCACAAAGACAAACAAGAAATGACATTACAATAAACGGACTCACAATCCCCAATGGCACCAACATATGGATCGACATCCTAGCCATGCATCACGACCAAGCCCTTCGGGGCGACAAGGTCCACGAGTTTCGCCCCAAGAGATTCCAAAACGACGTCATTGCGGGTGGCTGCAGACACAAGATGGGCTATTTGCCCTTTGGGTTTGGAGGAAGAATGTGCATTGGAAGGCACTTAATGTTCATGGAGTATAAGATTTTCTTGACGCTTATCTTGTCGAAGTTTTCCTTCTCTTTGTCTCCCGATTATCGTCATTTACCTTCGATTATGCTCTCGCTCCGACCTGCCCAAGGTGTACCTCTCATTTTTCAACTATTGTAA 918 44.23 MKKKKLSSTFESSQITHNIHPILFPYFSRWQTIYGKIFTYWLGTEKVKKLWTEVNAKQWGKPRVFRRDRKSMFGNGLLMAEGDDWARQRHVITPAFNPSNLLAMASLMVDKWGNLVRWGHAQIEVEKEITSTAGEIIATTSFGQILGHKVCEFDFINLPQLKKMEWVMSEVLRLYPTAPNAQRQTRNDITINGLTIPNGTNIWIDILAMHHDQALRGDKVHEFRPKRFQNDVIAGGCRHKMGYLPFGFGGRMCIGRHLMFMEYKIFLTLILSKFSFSLSPDYRHLPSIMLSLRPAQGVPLIFQLL 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64936238 64941474 - Sed0018370.1 Sed01g3583 702887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3583 305 PANTHER CYTOCHROME P450 FAMILY MEMBER 13 144 IPR050665 GO:0004497(PANTHER)
Sed01g3583 305 Gene3D Cytochrome P450 151 304 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g3583 305 PRINTS P450 superfamily signature 166 177 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g3583 305 PRINTS P450 superfamily signature 253 264 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g3583 305 PRINTS P450 superfamily signature 244 253 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g3583 305 Pfam Cytochrome P450 152 287 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g3583 305 SUPERFAMILY Cytochrome P450 21 302 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g3583 305 Gene3D Cytochrome P450 8 150 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g3583 305 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 246 255 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3583 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3583 Sed-Chr1:64936238 Sed07g1035 Sed-Chr7:7464848 4.30E-83 dispersed
Sed01g3583 Sed-Chr1:64936238 Sed05g0502 Sed-Chr5:3448947 1.00E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g696 Blo06g01127 Blo15g00169 . . Bpe03g00123 Bpe07g00936 . . . Cmo18g01273 Cma02g01069 . Car02g00812 . Sed01g3583 Cpe05g00650 . Bhi01g01311 Tan01g0246 Cmetu06g0984 . Hepe07g0152 Mch10g0150 . Cla01g00435 Cam01g0458 Cec01g0447 Cco01g0469 Clacu01g0457 Cmu01g0436 Cre09g2076 . . . . Lsi05g01219 . . Cme06g01006 . . Bda06g00685 Bda15g00726 . . Bma08g00324 . . Cmo02g01087 . . Cma18g01250 . Car18g01157 Cpe09g00087 . Bhi12g00509 . . Lac11g0028 Hepe06g0699 . Lcy12g0026 Cla05g00887 Cam05g0974 Cec05g0978 Cco05g0977 Clacu05g0961 Cmu05g0918 Cre05g1003 . Csa03g01719 Chy06g00951 Cme09g01553
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0067616 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1