Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3584 ATGGCGGTAAGAGATGAATGTAAATTGAAGTTTTTGGAGCTAAAGGCGAAAAGAAACTACAGATTCATCATCTATAAAATAGATGAACAGGAAGTGGTGGTAGAGAAACTGGGAAATCCAGAAGCAACATATGAAGATTTTACCGGATCTTTTCCTGCAAACGAATGTCGTTATGCTGTCTTTGATTTTGATTTCATTACTGACGAGAATTGCCAGAAGAGCAAGATTTTCTTCATTGCATGGTCACCAGAAATAGCAAAGGTGAGAAGTAAAATGATGTATGCAAGTTCAAAGGATAGGTTCAAAAGAGAGCTAGATGGGATTCAATTTGAGCTGCAGGCAACAGATCCAAGTGAGATGAGCTTTGACCTTGTCAAGGCACGTGCATTTTAG 393 38.68 MAVRDECKLKFLELKAKRNYRFIIYKIDEQEVVVEKLGNPEATYEDFTGSFPANECRYAVFDFDFITDENCQKSKIFFIAWSPEIAKVRSKMMYASSKDRFKRELDGIQFELQATDPSEMSFDLVKARAF 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64945278 64945760 + Sed0010259.1 Sed01g3584 702888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3584 130 ProSiteProfiles ADF-H domain profile. 1 130 IPR002108 GO:0003779(InterPro)
Sed01g3584 130 FunFam Actin-depolymerizing factor 2 1 130 - -
Sed01g3584 130 CDD ADF_cofilin_like 1 129 IPR017904 GO:0015629(InterPro)|GO:0030042(InterPro)
Sed01g3584 130 Gene3D Severin 1 129 IPR029006 -
Sed01g3584 130 PANTHER COFILIN-RELATED 1 129 IPR017904 GO:0005737(PANTHER)|GO:0015629(PANTHER)|GO:0015629(InterPro)|GO:0030042(InterPro)|GO:0030042(PANTHER)|GO:0051015(PANTHER)
Sed01g3584 130 SMART adf_2 5 130 IPR002108 GO:0003779(InterPro)
Sed01g3584 130 Pfam Cofilin/tropomyosin-type actin-binding protein 7 127 IPR002108 GO:0003779(InterPro)
Sed01g3584 130 SUPERFAMILY Actin depolymerizing proteins 1 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3584 K05765 - - csv:101220871 246.128
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3584 Sed-Chr1:64945278 Sed07g1043 Sed-Chr7:7528212 1.40E-62 dispersed
Sed01g3584 Sed-Chr1:64945278 Sed05g0504 Sed-Chr5:3474548 1.20E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000141 6 14 5 5 6 6 11 5 5 6 6 6 12 6 6 9 6 7 12 5 7 7 6 5 7 5 5 13 9 5 213