Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g3590 | ATGGTGCTGGCGGTGAAGGCGTTTCCGGTGACGGTGGCGGGGCACGTGGTGGGAATCGCGGCGGTGATCATGGTGCTGATTTGGACCATTCACTTCAGAGGCGGCCTCGCTTGGGAGGCCGTTAATAAGAATCTCATCTTCAATATTCATCCAGTTCTTATGCTACTGGGATTGATCGTCATAGGAGGTGAAGCAATAATGAGTTATAGATCGGTGCCATTGAAGAAAGAAACGAAGAAATTGATCCATTTAGTGCTACACGGCGTGGCATTGGCATTGGGCATTGTGGGAATCTGTGCTGCGTTCAAAAACCACAATGAGAGTGGGATTGCTAATCTTTACAGCTTGCACTCTTGGATTGGAATTGGCGTCATTGTCCTCTACGGTCTCCAGTGGGTGTTTGGATTCGCTACGTTCTTCTACCCAGGAGGATCGCCTGACCTTCGAAGGGCATCACTTCCATGGCACGTGCTACTCGGCATCATTGTTTACATATTGGCGGGTGCCAACTCGGCGCTCGGCTTCCTCGAGAAACTCACATTTCTTGAGAGCTCGGGCATCGCCAAGTACGGCACCGAGGCCTTCCTCGTCAACTTCACTGCCATCACCACCCTCCTCTTTGTAGTGTTAGTCATTTTGTCTGTTATTTCACAGCGACCCTCCGTCGAAGAAGATGACAATGGAGCCTATGTTGCTATATCATAG | 705 | 50.21 | MVLAVKAFPVTVAGHVVGIAAVIMVLIWTIHFRGGLAWEAVNKNLIFNIHPVLMLLGLIVIGGEAIMSYRSVPLKKETKKLIHLVLHGVALALGIVGICAAFKNHNESGIANLYSLHSWIGIGVIVLYGLQWVFGFATFFYPGGSPDLRRASLPWHVLLGIIVYILAGANSALGFLEKLTFLESSGIAKYGTEAFLVNFTAITTLLFVVLVILSVISQRPSVEEDDNGAYVAIS | 234 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 64986070 | 64993041 | + | Sed0005966.1 | Sed01g3590 | 702894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g3590 | 234 | Gene3D | - | 1 | 225 | - | - | |
| Sed01g3590 | 234 | CDD | Cyt_b561_ACYB-1_like | 42 | 183 | - | - | |
| Sed01g3590 | 234 | FunFam | Cytochrome b reductase 1 | 4 | 225 | - | - | |
| Sed01g3590 | 234 | ProSiteProfiles | Cytochrome b561 domain profile. | 13 | 216 | IPR006593 | - | |
| Sed01g3590 | 234 | SMART | 561_7 | 49 | 175 | IPR006593 | - | |
| Sed01g3590 | 234 | Pfam | Eukaryotic cytochrome b561 | 49 | 181 | IPR006593 | - | |
| Sed01g3590 | 234 | PANTHER | CYTOCHROME B561-RELATED | 4 | 219 | IPR043205 | GO:0016491(PANTHER)|GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g3590 | Sed-Chr1:64986070 | Sed11g2091 | Sed-Chr11:34837002 | 4.10E-49 | dispersed | |
| Sed01g3590 | Sed-Chr1:64986070 | Sed03g0307 | Sed-Chr3:1853501 | 5.50E-54 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g3590 | K08360 | - | csv:101209308 | 376.326 |