Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3620 ATGAAGCTCTTCATCCCCTTCCTTCCATGGCAGAACCTTCTCCTCTTCTTAATCCTTGCTTCTTCTCCTCTCCTTCACTCTTCCCCTGTTTCCTCTTCTTCCTTGCTTCCCCTCAACGAAGGACGAGCGTTAATGTCAATCAAGGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTCGACTGGGATGATCATCATGATAACGATTTCTGTTCTTGGCGTGGGGTTTTCTGCGATAATCTTACCCTTTCTGTTGCTGCTCTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCAGCCATTGGTGATTTGAGAAATTTACAGTCAATTGATTTTCAAGGGAATAAACTAACGGGCCAAATCCCTGATGAGATTGGAAACTGTGGTCTTCTTGTCCATTTAGACTTGTCTGATAATGTGCTTTATGGAGACATCCCATTCACAGTATCTAAGCTGAAGCAGCTCGAGTTCTTAAACCTGAAGAACAATCAGCTGACTGGCCCGATCCCTTCCACTCTTACTCAGATTCCTAATCTTAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGAGAGATACCTAGGTTAATCTATTGGAATGAAGTTCTGCAATATCTTGGGCTACGAGGGAACCATTTGACGGGGTCGTTGTCATCGGATATGTGTCAATTGACTGGCTTGTGGTACTTCGATGTTAGGGGCAACAATCTGACTGGCACTATACCGGATAGCATAGGGAACTGTACAAGTTTTGAAATTCTTGATATATCCTACAACCAGATCTCAGGGGAGATTCCATACAATATTGGATTCCTTCAAGTAGCCACTTTATCATTGCAGGGAAATAGATTGACTGGTAAGATTCCCAATGTCATTGGATTGATGCAGGCCCTAGCTGTCCTGGATTTGAGTGAGAATGAGCTGGAAGGGCTTATTCCGCCAATACTCGGCAACTTGTCCTACACAGGAAAATTGTACCTTCATGGCAACAAGTTGACTGGGCCAATTCCTCCTGAGCTAGGCAATATGTCAAAGCTTAGCTACTTGCAACTGAATGATAACCAGCTGGTTGGCACAATTCCTCCTGAACTTGGCAAATTGGATCAGTTGTTTGAACTGAATCTTGCTAATAATTACCTTGAAGGACCCATTCCTCACAACATCAGCTCTTGCTCTGCACTGAATCAGTTCAATGTGCATGGAAATCGCCTCAATGGATCGATTGCTTTGGGTTTCCAAGAACTGGAGAGCTTAACATATTTGAACCTTTCAGTAAACAACTTCAAAGGAAGGATTCCCATTGAGCTGGGACACGTTGTTAACCTCGATACGTTAGATCTCTCTGGAAACTACTTTTCGGGTCCTGTTCCTATATCTATTGGCGATTTGGAGCACCTTCTTATCCTCAATTTGAGTGATAATCAACTTGTTGGGTCATTACCAGCAGAATTTGGGAATCTCCGTAGCATCCAGACTATTGACATGTCATTGAACAACTTCTCCGGTAGCATACCCATGGAGCTGGGTCAACTGCAAAACATTATCACCCTAATTTTGAACAACAACCATTTGCAAGGCAAGATACCTGATCAGCTGACAAATTGTTTTAGCCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTGCCTCCCATGAAAAATTTCTCTCGATTTGAACCGGATAGTTTTATTGGGAATCCGCTGCTCTGTGGAAACTGGCTGGGATCGATTTGTGGACCTTATATGGAAAGATCTCGAGCAATGTTGTCTAGGACAGCAGTTGTTTGGATGACATTTGGATTCATCATATTGCTGTCAATGGCCATACTTGCTGTGTACAAGTCGAATCCATCAAAGCAATTGACGAAGGGATCGAGCAAGACTGGGCAAGGTCCTCCAAAACTTGTGGTACTTCATATGGATATGGCTATTCACACCTTTGACGACATCATGAGAATGACCGAGAATCTAAGCGAGAAGTACATTATCGGTTATGGAGCTTCGAGCACTGTGTACAAATGTTTACTAAAAAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTACGGACACAATCCACGGGAGTTTGAGACTGAACTTGGAACCATTGGTAGTATTAGACATAGAAACCTTGTTGTTCTTCATGGTTATTCATTATCTCCTTGTGGAAATCTCCTCTTCTATGACTACATGGAAAATGGTTCTCTCTGGGATCTGCTTCATGGGCCAGGTACAAAGGTTAAACTGGATTGGGAAGCACGTCTGAAGATTGCGGTCGGAGCTGCGCAAGGGCTTGCATATCTTCACCACGACTGCAACCCGCGAATCATTCACAGGGATGTTAAGTCTTCCAATATTCTACTGGATGAAAATTTTGAGGCCCATCTTTCTGATTTTGGGATTGCAAAATGTATCTCAACTGCCAAAACACATGCATCCACCTATGTGCTCGGAACAATTGGCTACATTGATCCAGAGTATGCTCGAACTTCGCGGCTTAATGAGAAATCCGATGTTTATAGCTTTGGAGTTGTTCTTCTGGAACTATTAACTGGAAAGAAAGCTGTGGATAATGAGTCCAATTTGCATCAACTGATATTGTCCAAGACTGATGACAATACTGTGATGGAAGCTGTCGATCCGGAGGTTTCGGTCACCTGCATGGACTTAACCCATGTCCGGAAAACATTCCAACTAGCTCTCCTCTGCACAAAACGCAATCCCTCCGAACGGCCAACCATGCACGAAGTTGCAAGAGTATTGATCTCCCTGCAGCCACCACCGCCACCTACTGTGAAACAAACATTGTTCCCCACAAAAACGTTGGATTATGCACAGTTCGTGATCGATAAGGGTCAGAATCAACACGTGAAAGGGCAGGACGAGCAGCAGAAATTAGACGTGGATTCTTCGGATGCCCAGTGGTTTGTCCAGTTCGGGGAAGTTATATCGGAACAACACAGTTTGAATCAATAA 2994 43.52 MKLFIPFLPWQNLLLFLILASSPLLHSSPVSSSSLLPLNEGRALMSIKASFSNVANVLLDWDDHHDNDFCSWRGVFCDNLTLSVAALNLSNLNLGGEISPAIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNVLYGDIPFTVSKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNHLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPNVIGLMQALAVLDLSENELEGLIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGTIPPELGKLDQLFELNLANNYLEGPIPHNISSCSALNQFNVHGNRLNGSIALGFQELESLTYLNLSVNNFKGRIPIELGHVVNLDTLDLSGNYFSGPVPISIGDLEHLLILNLSDNQLVGSLPAEFGNLRSIQTIDMSLNNFSGSIPMELGQLQNIITLILNNNHLQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPDSFIGNPLLCGNWLGSICGPYMERSRAMLSRTAVVWMTFGFIILLSMAILAVYKSNPSKQLTKGSSKTGQGPPKLVVLHMDMAIHTFDDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYGHNPREFETELGTIGSIRHRNLVVLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGTKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCISTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGVVLLELLTGKKAVDNESNLHQLILSKTDDNTVMEAVDPEVSVTCMDLTHVRKTFQLALLCTKRNPSERPTMHEVARVLISLQPPPPPTVKQTLFPTKTLDYAQFVIDKGQNQHVKGQDEQQKLDVDSSDAQWFVQFGEVISEQHSLNQ 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65410772 65416806 + Sed0016526.1 Sed01g3620 702924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3620 997 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 202 311 - -
Sed01g3620 997 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 632 736 - -
Sed01g3620 997 Gene3D Ribonuclease Inhibitor 203 275 IPR032675 -
Sed01g3620 997 Gene3D Phosphorylase Kinase; domain 1 626 736 - -
Sed01g3620 997 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 737 937 - -
Sed01g3620 997 Pfam Leucine Rich Repeat 490 512 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 253 273 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 538 555 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 346 368 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 325 344 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 371 392 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 299 320 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 228 249 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 418 439 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 466 488 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 155 175 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 179 198 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 514 536 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Leucine Rich Repeat 442 464 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 Pfam Protein kinase domain 664 924 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3620 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3620 997 SUPERFAMILY L domain-like 39 321 - -
Sed01g3620 997 SUPERFAMILY L domain-like 319 575 - -
Sed01g3620 997 Gene3D Ribonuclease Inhibitor 38 202 IPR032675 -
Sed01g3620 997 SMART serkin_6 661 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3620 997 Gene3D Transferase(Phosphotransferase) domain 1 737 933 - -
Sed01g3620 997 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 38 201 - -
Sed01g3620 997 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515(InterPro)
Sed01g3620 997 ProSiteProfiles Protein kinase domain profile. 661 930 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3620 997 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 312 585 - -
Sed01g3620 997 Gene3D Ribonuclease Inhibitor 276 589 IPR032675 -
Sed01g3620 997 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Sed01g3620 997 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524(InterPro)
Sed01g3620 997 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 928 IPR050647 GO:0009553(PANTHER)|GO:0010103(PANTHER)|GO:0048481(PANTHER)
Sed01g3620 997 SMART LRR_typ_2 344 368 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 416 440 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 177 201 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 153 176 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 105 129 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 464 487 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 296 319 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 512 536 IPR003591 -
Sed01g3620 997 SMART LRR_typ_2 225 249 IPR003591 -
Sed01g3620 997 SUPERFAMILY Protein kinase-like (PK-like) 639 928 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3620 Sed-Chr1:65410772 Sed05g1798 Sed-Chr5:31590989 5.00E-19 dispersed
Sed01g3620 Sed-Chr1:65410772 Sed13g1910 Sed-Chr13:24071046 7.60E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78725 PF00069 Pkinase 6.50E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3620 K20718 - csv:101213139 1734.92