Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3624 | ATGGATCTGATCTCCGATGACCACCACCACTACAGCAGCCGCTCCGACGACGAGATTCTGTTGGCCTCTCAGTACCCGAAGAAAAGGGCGGGGAGAAAAAAGTTCAAGGAAACCCGCCACCCGGTCTACCGCGGCGTCCGCCGGCGAAACTCCAGCAAGTGGGTCTGTGAAGTTCGGGAGCCGAACAAGAAGACCAGGATTTGGCTCGGGACTTTCCCGACGGCCGAAATGGCGGCGAGGGCTCACGACGTCGCCGCCATCGCCCTCCGCGGCCGCGCCGCCTGTCTCAATTTCGCCGACTCTGCCTCTAGATTGCCCCTTCCGGCCACCGTGGACCCCAAGGATATTCAGAAGGCCGCCGCCGAGGCTGCGGAGGCGTTCCGGGTTGTGCCGGAGATCGCTCCGGCGCCGGTCGGGGAGGCGGAGGAGGATGTGTTTTATTTGGATGAGGAGGTGTTTGGGATGCCGGGGTTGTTGGCGGATATGGCGGAGGCAATGCTGCTGCCGCCGCCGTGTTGTGTGAGCGGCGCCGGTGACGGCGGTTATGGTGCGAATTCGATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCCATTTGA | 603 | 61.86 | MDLISDDHHHYSSRSDDEILLASQYPKKRAGRKKFKETRHPVYRGVRRRNSSKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRAACLNFADSASRLPLPATVDPKDIQKAAAEAAEAFRVVPEIAPAPVGEAEEDVFYLDEEVFGMPGLLADMAEAMLLPPPCCVSGAGDGGYGANSMDFDADMSLWSYSI | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 65439806 | 65440959 | - | Sed0024508.1 | Sed01g3624 | 702928 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3624 | 200 | CDD | AP2 | 43 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3624 | 200 | SUPERFAMILY | DNA-binding domain | 42 | 101 | IPR016177 | GO:0003677(InterPro) | |
Sed01g3624 | 200 | ProSiteProfiles | AP2/ERF domain profile. | 42 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3624 | 200 | SMART | rav1_2 | 42 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3624 | 200 | FunFam | Ethylene-responsive transcription factor 2 | 41 | 100 | - | - | |
Sed01g3624 | 200 | PRINTS | Ethylene responsive element binding protein signature | 43 | 54 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3624 | 200 | PRINTS | Ethylene responsive element binding protein signature | 65 | 81 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3624 | 200 | Pfam | AP2 domain | 41 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3624 | 200 | Gene3D | AP2/ERF domain | 42 | 100 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3624 | 200 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 9 | 198 | IPR045277 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3624 | Sed-Chr1:65439806 | Sed13g0173 | Sed-Chr13:1119894 | 3.50E-57 | dispersed | |
Sed01g3624 | Sed-Chr1:65439806 | Sed05g0530 | Sed-Chr5:3848451 | 3.40E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37390 | PF00847 | AP2 | 5.20E-15 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3624 | - | - | - | 0.0 |