Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3624 ATGGATCTGATCTCCGATGACCACCACCACTACAGCAGCCGCTCCGACGACGAGATTCTGTTGGCCTCTCAGTACCCGAAGAAAAGGGCGGGGAGAAAAAAGTTCAAGGAAACCCGCCACCCGGTCTACCGCGGCGTCCGCCGGCGAAACTCCAGCAAGTGGGTCTGTGAAGTTCGGGAGCCGAACAAGAAGACCAGGATTTGGCTCGGGACTTTCCCGACGGCCGAAATGGCGGCGAGGGCTCACGACGTCGCCGCCATCGCCCTCCGCGGCCGCGCCGCCTGTCTCAATTTCGCCGACTCTGCCTCTAGATTGCCCCTTCCGGCCACCGTGGACCCCAAGGATATTCAGAAGGCCGCCGCCGAGGCTGCGGAGGCGTTCCGGGTTGTGCCGGAGATCGCTCCGGCGCCGGTCGGGGAGGCGGAGGAGGATGTGTTTTATTTGGATGAGGAGGTGTTTGGGATGCCGGGGTTGTTGGCGGATATGGCGGAGGCAATGCTGCTGCCGCCGCCGTGTTGTGTGAGCGGCGCCGGTGACGGCGGTTATGGTGCGAATTCGATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCCATTTGA 603 61.86 MDLISDDHHHYSSRSDDEILLASQYPKKRAGRKKFKETRHPVYRGVRRRNSSKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRAACLNFADSASRLPLPATVDPKDIQKAAAEAAEAFRVVPEIAPAPVGEAEEDVFYLDEEVFGMPGLLADMAEAMLLPPPCCVSGAGDGGYGANSMDFDADMSLWSYSI 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65439806 65440959 - Sed0024508.1 Sed01g3624 702928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3624 200 CDD AP2 43 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3624 200 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677(InterPro)
Sed01g3624 200 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3624 200 SMART rav1_2 42 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3624 200 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Sed01g3624 200 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3624 200 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3624 200 Pfam AP2 domain 41 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3624 200 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3624 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 198 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3624 Sed-Chr1:65439806 Sed13g0173 Sed-Chr13:1119894 3.50E-57 dispersed
Sed01g3624 Sed-Chr1:65439806 Sed05g0530 Sed-Chr5:3848451 3.40E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37390 PF00847 AP2 5.20E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3624 - - - 0.0