Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3626 ATGGCATCTTCTAGGGTTGCTGGAGGATTAGCCCAATCTTCCTCAAGTTCTGGGATTTGTTTCCAAGGAGATGGGCAATCCAAGGGTACTGTTAATTATCACCTGGGTTCATCTTATGGGAACTCATCAAGTTCAATTCCAGGACCTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGGGATGAATAATGGGGTGTTAAATAGTGTGCCAAACTCAGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAACTCTGCCCTTTCGGGTGGGCCTCACTTGCAGAGAAGTCCGAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCGTTTGCATCTAATAACATGAGTTTCTCAGGGGCATCGCTCATTGATGCATCTTCTGTAGTAAATCACAATTCTCGGCAGGATTATAATGCCCCACAATTGCCGCAGACCCAACCACAGGCTCGACAAGTTGCTGGATCTCTCATGACAGATGCGAGCAACTATTCTCAGTCACAGAAGAAGCCACGCTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGATGCTACAACAGCTAATGCAGAGACAAGATTCCCTGCAGCTGCAAGGTCGTAATACACCGCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGGCAACAGCAACAGATTTTTCAGTCTTTGCCTCCTTTGCAGAGAGCTCACCTGCAGCAGCAACAGCAGATCCAGTTGAGACAGCAACTTCAACAACAGGCAATTCAACCCACAAATGCTATGAAGCAGCCTAATGATGGTGGAGTATGTGCTCGAAGACTAATGCAGTACCTATACCATCAGCGACAAAGGCCTGCTGATAATAGTATTGGGTATTGGAGGAAGTTCGTGACAGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATACGAAAATGTTGGTCATCATGCCCTTGGTGTTTTCCCTCAAGCAGCTATGGATGCATGGCAGTGTGACATCTGTGGCTCAAAATCTGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGACTTAACGAGATCAAATTTGGCAGTGGAGTAATTGACGAGCTGCTGTTCTTGGACATGCCTCGGGAATTCAGATATTCATCTGGAATTATGATGCTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATATGAGCAACTTCGCGTTGTTCGTGAGGGTCACCTTCGTATCATATTTACTCACGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCCCCTCAGGTGAATCAGTTGGTCCAGGTTGCACAGAAATGCCAGAGCACTATCCCTGAAGGAGGATCCGATGGGGCATCTCAGCAAGATTTACAAGCTAATAGTAAAATGGTTTTGACGGCTGGGCAGCAGCTTGCAAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTTAGATGCTTGCAGATATCAGAGGTTGTTAATAGCATGAAAGATCTGATTGATTTCTGTAGGGAGCAGAAAACTGGACCAGTTGAGTGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCAGATACAAAAGATGCAAGAAATTGAACAGGTAACTACTGCCCAAGGTCTGCCAACCGAACGCAACACTCTTAGTAGAATGGTCGCCCTGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCAACTTATCGGTGGAGGAACGTTGAGTGGTTCGGCACAAGCCGCATTGGCATTCTCTAACTACCAGAATCTACTTATGAGACAGAACTCAATGAATTCAACCAGTTCCAACCCATTACAGCAGGTGCCATCATCATCCTTCAATAGGTCAAACCAGAGTCCTTCATCAAGCTTTCATGGGACAGATGCTTCAACATCAGGGCCGACACAGAACCTACCTGGTAATGCTCTTTCAAGTCCTCATCTAGCTCCGCATCAATCACAACAATCTCAGGTTCAGCATCAACTGCATCAGCGCCCTAACGCCAACAACTTACGCGGCCCAAACCATCTCCAGAGCAACCATACCGGTAACAATAATCAGGCCATGCAACATCAGATGATCCAGAAAGTACTCCACATATCTAATAACAATGGGGGAGGGCAACAGCAACCAGTTACTGGATCGAACACGATCACGAACATGAATGGAAGTGCGGGAAGAACTTATTCAGGGTTCGGAGGAAGTTCTTCTGTGGCGGCGTCTGGCATAACCAATGCATCTGCTAATAACACGCCTGCCCCGAGCCGGAGTAATAGTTTTAAAAGTGCTTCAATTGGGGATGTATCAGCAGCAGCAGCTGGTGGTTGTAGCAGCAGTGGGTTCAACCAAAGAAATGCAGATTTGCAGCAAGATCTTCATTTAAATGAGGATATAATTCAGGATATAGCCCATGATTTTACAGAAAATGGGTTTTTTAACAGTGATCTTGACGATAATATGTGCTTTTGGAAAGATTAA 2541 45.3 MASSRVAGGLAQSSSSSGICFQGDGQSKGTVNYHLGSSYGNSSSSIPGPGHSNLGPVSGGMNNGVLNSVPNSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFASNNMSFSGASLIDASSVVNHNSRQDYNAPQLPQTQPQARQVAGSLMTDASNYSQSQKKPRLDIKQDDFLQQQMLQQLMQRQDSLQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHLQQQQQIQLRQQLQQQAIQPTNAMKQPNDGGVCARRLMQYLYHQRQRPADNSIGYWRKFVTEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGHLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIPEGGSDGASQQDLQANSKMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVECLKSYPQHATAKLQIQKMQEIEQVTTAQGLPTERNTLSRMVALHPGLNNQMNSQNQLIGGGTLSGSAQAALAFSNYQNLLMRQNSMNSTSSNPLQQVPSSSFNRSNQSPSSSFHGTDASTSGPTQNLPGNALSSPHLAPHQSQQSQVQHQLHQRPNANNLRGPNHLQSNHTGNNNQAMQHQMIQKVLHISNNNGGGQQQPVTGSNTITNMNGSAGRTYSGFGGSSSVAASGITNASANNTPAPSRSNSFKSASIGDVSAAAAGGCSSSGFNQRNADLQQDLHLNEDIIQDIAHDFTENGFFNSDLDDNMCFWKD 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65486910 65507527 + Sed0002353.1 Sed01g3626 702930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3626 846 MobiDBLite consensus disorder prediction 617 705 - -
Sed01g3626 846 MobiDBLite consensus disorder prediction 140 160 - -
Sed01g3626 846 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g3626 846 MobiDBLite consensus disorder prediction 40 100 - -
Sed01g3626 846 MobiDBLite consensus disorder prediction 722 742 - -
Sed01g3626 846 Pfam LIM-domain binding protein 275 535 IPR029005 -
Sed01g3626 846 PANTHER LIM DOMAIN-BINDING PROTEIN 15 836 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3626 Sed-Chr1:65486910 Sed13g0163 Sed-Chr13:1039241 3.90E-259 dispersed
Sed01g3626 Sed-Chr1:65486910 Sed10g2090 Sed-Chr10:37332533 2.00E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3626 - - - 0.0