Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3642 ATGTCGTTCTCTGATTCCGATTCATCTGTCGGCGACTACAAAAGTTTCAGGCAAATCAGCCGCGAGCGATTGCTGCATGAGATGCTTCGCTCAGCTAAAACAGGGGATTCCAAATCAACTTGGAAGGTTCTCATCATGGACAGACTTACTGTCAAGATAATGTCATACTCATGCAAGATGGCTGATATCACAGATGAAGGTGTTTCATTGGTGGAAGACATATACAGAAGAAGGCAGCCACTGCCATCCATGGATGCTATCTATTTCCTTCAGCCTTCTCGAGAGAATGTTATCATGTTCCTGTCAGACATGTCAGGGAGATCTCCTTTATACCGGAAGGCATTTGTTTTCTTCAGTTCACCTATATCAAAAGAATTAGTCACTCACATCAAGAGAGATTCAACAGTTTTACCTCGTATAGCTGCCCTAAAAGAGATGAATTTGGAGTACTTTGCTATAGACAGCCAGGGTTTTATCACCAACAACGAGAAAGCTCTGGAGGAACTTTTTTGTGATGAAGAGAGTTCTCAAAAAGGTGTAGCATGCTTGAATGAGATGGCTACCCGTGTTGGCACAGTTTTTGCGTCATTAAAGGAATTTCCATTTGTTCGGTACCGAGCTGCCAAGTCTCTTGATGCAACTACAATGACAACTTTGCGTGACCTCATTCCTACAAAAGTTGCTGCAGGTGTCTATGACTGTATTACAACATATAAGAAAACGATCCCCAATTTTCCCCAGTCCGAAACATGTGAGCTGCTGATTCTTGATCGGTCCATAGATCAGATTGCTCCTGTTATACATGAATGGACATATGATGCAATGTGCCGTGATTTGCTAAGCATGGAGGGGAATAAATATGTTCACGAGGTTCCAAGCAAAGTTGGAGGTCCACCAGAGAAGAAAGAGGTCCTCTTGGAGGAGCACGATCCAGTTTGGTTTGAGCTTCGCCATGCGCACATTGCAGATGCGAGTGAGCGTTTGCATGAGAAGATGACCAACTTTGTATCTAAGAATAAAGCTGCACAAATCCATCAAGGTTCAAGAAATAGTAGTGAACTCTCCACTCGGGATCTGCAAAAGATGGTTCAAGCATTGCCACAATATAGTGAACAAATTGATAAGCTCTCCCTACATGTGGAGATTGCAGTAAAACTAAACAAGTTAATCAAGGATCAGGGACTAAGAGAACTAGGGCAAATTGAGCAGGACCTTGTTTTTGGAGATGCAGGAACAAAAGATGTAATTAAGTTTTTGACAACCAACGAGGATGCAAGTCGTGAAAATAAGTTGCGATTATTGATGATTTTTGCAGCCATTTACCCAGAGAAATTTGAGGGTGAGAAAGGTCTAAATTTAATGAAGTTAGCAAAACTACCACAAGAGGATATGAATGCTGTTACCAACATGAGATTACTTGGTAGCGCACCTGATAGCAAAAAAAGCTCGTTGGGGTCATTTTCTTTGAAGTTTGATATTCATAAGAAGAAGCGTGCAGTTAGGAAACAGCAAAATGGTGAAGCAGAAGCATGGCAATTATCACGGTTTTATCCCATAATAGAGGAACTAATTGAAAAACTTAGCAAAGGTGAATTATCCAAGGAGGATTATCCATGTCTTAATGACCCGAGTCCAACGTACCATGGACCATCTCATACAGCAGCAGCTCAGCCACCTCCAGCCGCTCATTCAATGAGATCAAGACGTACTCCAACATGGGCCCGGCCTCGTAATTCTGATGATGGATACTCAAGTGATTCGATACTAAGGCATGCATCCAGTGATTTTAAGAAGATGGGTCAGCGTATCTTTGTATTTATTGTAGGTGGAGCAACTCGATCTGAGCTTAGAGTTTGTCACAAGCTTACAACAAAGTTGAAGAGAGAAGTAATTTTAGGTTCCACAAGTATTGATGATCCTCCACAATTTATTACGAAGCTTAAGATGTTGTCTGCAGAAGAGCTATCATTGGATGATCTCCAGATATGA 1989 41.68 MSFSDSDSSVGDYKSFRQISRERLLHEMLRSAKTGDSKSTWKVLIMDRLTVKIMSYSCKMADITDEGVSLVEDIYRRRQPLPSMDAIYFLQPSRENVIMFLSDMSGRSPLYRKAFVFFSSPISKELVTHIKRDSTVLPRIAALKEMNLEYFAIDSQGFITNNEKALEELFCDEESSQKGVACLNEMATRVGTVFASLKEFPFVRYRAAKSLDATTMTTLRDLIPTKVAAGVYDCITTYKKTIPNFPQSETCELLILDRSIDQIAPVIHEWTYDAMCRDLLSMEGNKYVHEVPSKVGGPPEKKEVLLEEHDPVWFELRHAHIADASERLHEKMTNFVSKNKAAQIHQGSRNSSELSTRDLQKMVQALPQYSEQIDKLSLHVEIAVKLNKLIKDQGLRELGQIEQDLVFGDAGTKDVIKFLTTNEDASRENKLRLLMIFAAIYPEKFEGEKGLNLMKLAKLPQEDMNAVTNMRLLGSAPDSKKSSLGSFSLKFDIHKKKRAVRKQQNGEAEAWQLSRFYPIIEELIEKLSKGELSKEDYPCLNDPSPTYHGPSHTAAAQPPPAAHSMRSRRTPTWARPRNSDDGYSSDSILRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTTKLKREVILGSTSIDDPPQFITKLKMLSAEELSLDDLQI 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65613829 65630572 + Sed0013991.1 Sed01g3642 702946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3642 662 Gene3D - 157 647 IPR027482 -
Sed01g3642 662 MobiDBLite consensus disorder prediction 538 586 - -
Sed01g3642 662 Gene3D - 8 145 IPR043154 -
Sed01g3642 662 Pfam Sec1 family 42 645 IPR001619 GO:0016192(InterPro)
Sed01g3642 662 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 269 392 IPR043127 -
Sed01g3642 662 SUPERFAMILY Sec1/munc18-like (SM) proteins 14 653 IPR036045 -
Sed01g3642 662 FunFam SNARE-interacting protein KEULE 269 392 - -
Sed01g3642 662 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 14 644 IPR001619 GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006904(PANTHER)|GO:0016192(InterPro)|GO:0016192(PANTHER)|GO:0019905(PANTHER)|GO:0030141(PANTHER)
Sed01g3642 662 Gene3D - 393 517 - -
Sed01g3642 662 PIRSF VPS45_Sec1 11 657 IPR001619 GO:0016192(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3642 K15292 - - csv:101217110 1234.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3642 Sed-Chr1:65613829 Sed09g0113 Sed-Chr9:872401 1.20E-258 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1219 . . . . . . . . Cmo04g02542 Cmo15g00629 . . . . Sed01g3642 . Cpe13g00665 Bhi04g01816 Tan11g1186 Cmetu03g0425 . Hepe02g2770 . Lcy10g1316 . . . . . . . . . Cone17ag0798 Cone20ag0397 . . . Cme03g00395 Blo17g00221 . . Bda13g01531 . Bpe14g00330 . Bma02g00280 . . . . . Car04g02340 Car15g00571 Cpe01g02102 . . . . . . . . . . . . . . . Lsi08g00525 . Chy03g00589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001688 2 5 1 2 2 2 4 2 2 1 3 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 3 70