Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3647 ATGGCTTCCATTCCCCTTCTCTCTCTCCCCTTCTCTCTCAAGCCCTCTTTCTTCCCCAAAAGACTCTCCAATTTCTCCGTATCGCCGCCGCTCCGCCGTTCCACTTCTTTCCAGCCATTTCCCACGGCGGCTGTTCACAAAGGGTTTAAGCCTGCAACCAAAACCAGCGGCTCTACTTTCGCCTATGTCACCGGCCCTGCCTCGGACCCTAATGTCTGCGATTCCGACCCCAAGGTCGACGAAGATGCTTCCGATTCCGAGGTTCGGGTTCTCGGAGTCTTGAATTGGGGGCTCTTGTTGAGGCTTTTGATGAAGCACAAGCTGCGGCTTCTGGTTTCTTCGCTTACTCTTGTTTGCTGCACCACTTGCACTCTTTCCATGCCTCTTTTCTCTGGTAGATTCTTTGAGGTACTTATTGGTGCAAAACCTGGGTCTTTGTGGAGTCTGTTGAGTACAATTGGAATTTTATATGCGATGGAGCCAATATTGACGGTTCTGTTTGTCACAAACATGAATTTCATGTGGGAGAAGGTCATGTCGAGATTAAGAGCCCAAATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATCTGGGCTCGCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCATTTTCTGAGGTGGTTGGAACACTATGTATATTATTTACCTTGTCCCCCCAACTTGCCCCTATTCTTGGTCTGCTGATGCTTAGTGTATCGTTGTCAGTGGCTGTATACAAGCGTTCAACTATTCCTGTATTTAAAGCTCATGGATCAGCTCAAGCATCCATGGCCGATTGTGCAACAGAGACATTCTCTGCTATTCGTACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGCTCACTTTTGGTCGTCAGGTTATTGCGTGTGAGGGTAGTGGTATATCACTTGGGACTTTTAAAGCTCTGAACGAATCTTTAACTAGAGTTGCTGTTTATATTTCGCTTATGACATTGTATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAGCCATGGCATCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTAGTAAATACATTTGGCGATCTCCGTCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAAGGAAGAGATTGATGAATCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTCAATACAAGTTGTTATTCTCCGGTGATAATGACGAAAATAGTCGAGTGAAAACGCAGTACATGGCAGCCCTAAAGTCTTCTAACAACGTTACGGATCTTGCTTGGTCTGGTGATATTTCTCTTGAAGATGTGTGTTTTTCTTATCCTTTGAGACCTGACGTTCACATTCTTAGGGGTTTGAATTTAACCCTTAAATGCGGAACCGTAACGGCATTAGTGGGCGCTAGTGGAGCAGGCAAGAGTACAATAGTACAGCTGTTGTCACGTTTTTATGAGCCAAAGCAAGGGCATATTAAAGTTTCTGGTGAAGATATTCGAGCATTTGATAAGAGGGAATGGGCTCGGGCTGTTTCAATTGTGAATCAAGAACCTGTGCTTTTTTCGGTATCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACGAAGGAAGAGGTGATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCACAGGGCTACGACACGCCTGTCGGCGAACGTGGAGGCCTTCTAAGCGGTGGCCAACGACAGAGAATTGCAATTGCAAGAGCTTTGCTTAAGAATGCACCAATCCTTATACTTGACGAGGCAACCAGTGCACTGGATGCGGTTAGTGAGCGACTGGTCCAGGAGGCTCTGAACCATCTAATGAAGGGAAGAACGACATTGGTGATCGCACATCGGTTGAGTACGGTTCAAAATGCTCATCAAATTGCATTTTGTTCTGATGGAAGGATTATAGAGCTGGGAAGTCATTCAGAACTATTGGCTCAGAAAGGTCAGTACGCTTCATTGGTTGGCACACAAAGGCTGGCATTTGAGTGA 2133 44.59 MASIPLLSLPFSLKPSFFPKRLSNFSVSPPLRRSTSFQPFPTAAVHKGFKPATKTSGSTFAYVTGPASDPNVCDSDPKVDEDASDSEVRVLGVLNWGLLLRLLMKHKLRLLVSSLTLVCCTTCTLSMPLFSGRFFEVLIGAKPGSLWSLLSTIGILYAMEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVVGTLCILFTLSPQLAPILGLLMLSVSLSVAVYKRSTIPVFKAHGSAQASMADCATETFSAIRTVRSFGGEKRQMLTFGRQVIACEGSGISLGTFKALNESLTRVAVYISLMTLYWLGGDKVKAGELSVGAMASFIGYTFTLTFAVQGLVNTFGDLRRTFAAVERINSVLKEEIDESLAYGLEKEMQQKEFQYKLLFSGDNDENSRVKTQYMAALKSSNNVTDLAWSGDISLEDVCFSYPLRPDVHILRGLNLTLKCGTVTALVGASGAGKSTIVQLLSRFYEPKQGHIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKEEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGRIIELGSHSELLAQKGQYASLVGTQRLAFE 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65682886 65690850 - Sed0012146.1 Sed01g3647 702951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3647 710 ProSitePatterns ABC transporters family signature. 607 621 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed01g3647 710 Pfam ABC transporter 484 635 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed01g3647 710 SUPERFAMILY ABC transporter transmembrane region 99 411 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed01g3647 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 466 704 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed01g3647 710 SMART AAA_5 493 688 IPR003593 GO:0016887(InterPro)
Sed01g3647 710 CDD ABC_MTABC3_MDL1_MDL2 466 705 - -
Sed01g3647 710 CDD ABC_6TM_TAP_ABCB8_10_like 115 402 - -
Sed01g3647 710 Gene3D - 458 708 IPR027417 -
Sed01g3647 710 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 394 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed01g3647 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 705 IPR027417 -
Sed01g3647 710 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 86 705 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Sed01g3647 710 Pfam ABC transporter transmembrane region 111 381 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed01g3647 710 Gene3D ABC transporter type 1, transmembrane domain 94 413 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed01g3647 710 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 464 708 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3647 Sed-Chr1:65682886 Sed01g3649 Sed-Chr1:65682886 3.20E-307 dispersed
Sed01g3647 Sed-Chr1:65682886 Sed01g3648 Sed-Chr1:65682886 0.00E+00 tandem
Sed01g3647 Sed-Chr1:65682886 Sed05g0553 Sed-Chr5:4031839 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3647 K05657 - csv:101211598 1132.47