Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3654 ATGGTGAGAGGAAAAGTGGAAATGAAACGAATAGAAAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTGTTGAAAAAGGCTTATGAGCTTTCAGTTCTTTGCGATGCTGAAGTTTCTGTCATTATTTTCTCCCAAAAAGGAAAACTCTATGAGTTTTCAAGCTCCGACATTCAAAAGTCAATTGAACGATACCGCAAATGTGGAAAAGATGGACAGACCAACACTTTTCGCTCGGAAGGCTACATGCAGCAACTGAAGCAGGAAGCTGACATGACGGCAAAGAAAATTGAGCAACTTGAAGACTCACAACAGAAGCTTTTGGGACGTGGCTTGAATTCTTGTTCCTTGGGGGAAATTCAAGAGATTGAAAGTCAGTTGGTACTGAGCTTAACCCGTATTAGAGAAACAAAATCTCAGCTATTCAAGGAGCAGAAGACGAAGCTGATTGAAAAGGGGAAACTCCTTGTAGAAGAAAATATAAAGTTATCTGCAAAGTGTGGTACTAAGCCATGGCAGCCAGAAAATGCTGAAGATGAGGGAGGCATTGTGAGTATATGCAGCCAAAGCAGCCAAGGTTCTGATATGCAAACTGAATTGTTCATTGGATTGCATTGCTCATAA 636 41.04 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGKLYEFSSSDIQKSIERYRKCGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLEDSQQKLLGRGLNSCSLGEIQEIESQLVLSLTRIRETKSQLFKEQKTKLIEKGKLLVEENIKLSAKCGTKPWQPENAEDEGGIVSICSQSSQGSDMQTELFIGLHCS 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65730428 65744925 + Sed0023514.1 Sed01g3654 702958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3654 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 Pfam K-box region 87 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g3654 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g3654 211 Coils Coil 87 107 - -
Sed01g3654 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g3654 211 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Sed01g3654 211 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed01g3654 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g3654 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3654 Sed-Chr1:65730428 Sed05g0562 Sed-Chr5:4054355 4.20E-93 dispersed
Sed01g3654 Sed-Chr1:65730428 Sed01g3655 Sed-Chr1:65730428 6.50E-70 tandem
Sed01g3654 Sed-Chr1:65730428 Sed05g0561 Sed-Chr5:4054355 4.20E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37391 PF01486 K-box 3.40E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3654 - - - 0.0