Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3666 ATGTCCGCCGAACCACCGCCCTCCGCCGCCGCCGATCACGATTCCTCCACCAAGCTCCCCCCCATCCCCATCCCCACCCGCCGCGATTCCGATCGAGAAGAACGCGTCCCTCATCAACCTGAAAATTCCTCCATCGTCATGGCCGCCTCCCTCGGGCTGAACCACATCCGGGTCCGGTCTGCTTCTCTGCCGCTCGGAACCTCCGCCATTGTTGCGCCCTCCATTTTGGGCGACGATTCCAGGAATAATGTCGCCAGTTCTGAAACGAAAGTTTCCTCCACTGAAACGGGGAACAAAATTCTGCGGAGTCAATCGAAATCGCTTAGGTACCCGTCTGATCCGGATTATGATTCTGAGGGTCACCATGCTGCTTGTTCGAAGGAAATTCGGTCTCCGAGATTTCGTGCAATACTTCGTGTCACTAGTGGAAAAAAGAAGAAAACCCCTGATATCAAAAGCTTCTCTCACGAGCTTAATTCGAAAGGAGTTCGCCCTTTTCCCGTTTGGAGGCCTCGGGCATTTCGACATTTGGAAGAGACCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTTAATTACGAACTGGGTATTTTTGCTGGAGATCTTGTAGATGTGCTTGTAAAGACAGATCCGTCTATGACTGAACTTAAAGAGGGTTTGGAGGATTTATTGGTGGTTTCTCGAAAATGTGCTACCATGTCGCCTTCTGAATTTTGGACGAAAGGGGAAGGGATTGTCCAGAATCTAGACGACCGGCGCCAGGAGCTGTCGTTTGGAATTCTTAAACAAGCCCACACCCGCCTTCTTTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGATCACATTTTGAGTCTTCACAAGCTTAGTGATCTAGGTATTTATCCAGAGAAACTTAGGCAGCTAGAACAACTTGACTTTGGTGATCCATTGACTGGGAAAGAAGATATTGAGAAGCAGCCGAAGTTAGCTGGGAAGGATCAAGCTCGGCGCAATGTAAAGCAAGATTTAGATCAAAGTTGTAGTAATAGTGCTGGAAATGTTGTTTTGGACTCTGCCGTAAGTATTGATTCGTCTTCAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAAAACCGGAAAGACTCTAACTCGACTGATTCCACACCTTCCAAGAATAAACTTGAACTTTCGCATGTACATGAAGCTAAAACTGGGAGAAATAACCAACTAGATACCCCATCTAGTCATATTGAGCATTCAGAAGCACCATGTAAAGAACAAAAAGTATCTTGGGGCATATGGGATTATCATCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCAATTATTCATGTTGAGGAGCATTCTCGGATATGCACAATGGCCGATAGGTGTGATTTGAAAGGTTTAACCGTGAACGAGCGCCTTGAACGGGTTGCTAGAGCTATTGAAAATATTCTAGAGTCTTGGACGCCTAAAACTACTCCAAGAAGTAGCGACACTTCCTGTGGAAATTTTGATACCGGTAAGGTATCTTCATCAAGTATGCAAGAAGAGACTCTTGAGTTTTCATCTAAAGGAATCAATTTGTCATGTCAAAACTCTGAAGATCTGCTTGATTCTCTCCCTGTTACTGGCAACTCTTCCTTTGTGGAAAGTCAGGATATATTTCCTGATCCATCATACAATCGTCCATTTATTTTCACACCAGATTACAGTACAAAATCAATGTCTGCTGGTAGTCTAACACCAAGATCACCTCTGTTAACACCCAGATCCAGCCAGATTGAATTGTTGTTGCATGGGCGCAGATCAATAACCGAACTTGAAAATTATCAGCAGATAAGCAAATTGTTGGATATTGTTCGTTCCATTGCAAACCTTAACAACTCTGACTATGGTGCATTGGAGTGTATGCTTGCTCGATTAGAAGACCTTAAATATGCAATCCAGGATAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTTTTGCAGGAAAAGTATGTACAACTTTGTGGGCAAATAGAAAATGATAAAGTAGACTTCTCAAATAGTACTGGAGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTTTGCGTGCAAGTCCTGTTAACCCATGTTCAAAAGATAGAACATCTATTGAAGATTTTGAAATAATCAAACCAATTAGTAGAGGGGCATACGGCCGAGTTTTCCTTGCTAAAAAAAGAGCAACTGGAGACTTATTTGCTATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGCAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGACATTTTCTCCTTACTGAAAAACTTAGGTTGCTTAGATGAAGAAATGGCTCGGATTTATATTGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACGTTAAGTTGACAGATTTTGGACTCTCCAAGATTGGACTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTGTTTCACTTGAAGACAATGGACCTACATCTCAATCTGCGTCAAAAAAAGAAAATGGACAAAAGCATTCAGTCGTTGGTACACCAGATTATTTGGCCCCTGAGATACTTCTAGGAATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGACTACCCCCATTCAATGCAGAAACTCCACAGAAAATTTTTGATAACATCATGAACAGAGACATACCATGGCCCAAGGTACCTGATGAAATGAGTTATGAAGCCCATGATTTGATTGACAAATTGTTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACAGGAGCCAGAGAGGTGAAGCGACATCCTTTCTTCAAGGATATTAATTGGGAAACACTTGCAAGACAGAAGGCAATGTTTATACCATCGGCAGAGGCACATGATACAAGTTATTTCATGAGTCGTTATATATGGAACCCAGAAGATGAGTATTTTAATGGTGGAAGTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATATAGCAACGTACAAGATGAAGAAGGAGACGAATGTGGTAGTTTGAATGACTTCTCTTCATCAGCCCTTCCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAGCTGGTTTCCATCAATTATGATTTGGTTGTGAAGAGCAGTCAAAACTCACCAGATGTATCCAAACCATCCTTTCCTTGA 3474 42.14 MSAEPPPSAAADHDSSTKLPPIPIPTRRDSDREERVPHQPENSSIVMAASLGLNHIRVRSASLPLGTSAIVAPSILGDDSRNNVASSETKVSSTETGNKILRSQSKSLRYPSDPDYDSEGHHAACSKEIRSPRFRAILRVTSGKKKKTPDIKSFSHELNSKGVRPFPVWRPRAFRHLEETMVAIRAKFDRLKDDVNYELGIFAGDLVDVLVKTDPSMTELKEGLEDLLVVSRKCATMSPSEFWTKGEGIVQNLDDRRQELSFGILKQAHTRLLFILTRCTRLIQFRKESGYEDDHILSLHKLSDLGIYPEKLRQLEQLDFGDPLTGKEDIEKQPKLAGKDQARRNVKQDLDQSCSNSAGNVVLDSAVSIDSSSSMYRMASWKKLPSAAEKNRKDSNSTDSTPSKNKLELSHVHEAKTGRNNQLDTPSSHIEHSEAPCKEQKVSWGIWDYHHQNATFENLMICRICEVEIPIIHVEEHSRICTMADRCDLKGLTVNERLERVARAIENILESWTPKTTPRSSDTSCGNFDTGKVSSSSMQEETLEFSSKGINLSCQNSEDLLDSLPVTGNSSFVESQDIFPDPSYNRPFIFTPDYSTKSMSAGSLTPRSPLLTPRSSQIELLLHGRRSITELENYQQISKLLDIVRSIANLNNSDYGALECMLARLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVQLCGQIENDKVDFSNSTGDEESSVEDDTVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLAKKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIFSLLKNLGCLDEEMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHVKLTDFGLSKIGLINSTDDFSGPSISGTVSLEDNGPTSQSASKKENGQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGLPPFNAETPQKIFDNIMNRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREVKRHPFFKDINWETLARQKAMFIPSAEAHDTSYFMSRYIWNPEDEYFNGGSDDHDLTDTCSSSSYSNVQDEEGDECGSLNDFSSSALPVKYSFSNFSFKNLSQLVSINYDLVVKSSQNSPDVSKPSFP 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65839661 65850699 - Sed0012555.1 Sed01g3666 702970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3666 1157 MobiDBLite consensus disorder prediction 385 436 - -
Sed01g3666 1157 MobiDBLite consensus disorder prediction 79 111 - -
Sed01g3666 1157 MobiDBLite consensus disorder prediction 25 39 - -
Sed01g3666 1157 SUPERFAMILY Protein kinase-like (PK-like) 745 1067 IPR011009 -
Sed01g3666 1157 MobiDBLite consensus disorder prediction 77 123 - -
Sed01g3666 1157 ProSiteProfiles AGC-kinase C-terminal domain profile. 1037 1137 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3666 1157 FunFam probable serine/threonine protein kinase IREH1 746 835 - -
Sed01g3666 1157 SMART serkin_6 748 1036 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3666 1157 MobiDBLite consensus disorder prediction 909 933 - -
Sed01g3666 1157 Gene3D Phosphorylase Kinase; domain 1 746 1063 - -
Sed01g3666 1157 CDD STKc_MAST_like 754 1041 - -
Sed01g3666 1157 MobiDBLite consensus disorder prediction 514 533 - -
Sed01g3666 1157 MobiDBLite consensus disorder prediction 1 43 - -
Sed01g3666 1157 ProSiteProfiles Protein kinase domain profile. 748 1036 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3666 1157 MobiDBLite consensus disorder prediction 909 935 - -
Sed01g3666 1157 Pfam Protein kinase domain 749 1036 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3666 1157 FunFam AGC protein kinase 828 899 - -
Sed01g3666 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 867 879 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3666 1157 MobiDBLite consensus disorder prediction 323 354 - -
Sed01g3666 1157 FunFam Serine/threonine protein kinase 15 927 1054 - -
Sed01g3666 1157 PANTHER SERINE/THREONINE-PROTEIN KINASE 454 1129 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed01g3666 1157 Gene3D Transferase(Phosphotransferase) domain 1 832 1054 - -
Sed01g3666 1157 MobiDBLite consensus disorder prediction 323 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3666 Sed-Chr1:65839661 Sed08g1996 Sed-Chr8:34316100 4.20E-304 dispersed
Sed14g0190 Sed-Chr14:2120123 Sed01g3666 Sed-Chr1:65839661 1.50E-27 dispersed
Sed01g3666 Sed-Chr1:65839661 Sed01g3667 Sed-Chr1:65840884 0.00E+00 tandem
Sed01g3666 Sed-Chr1:65839661 Sed05g0572 Sed-Chr5:4171466 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78727 PF00069 Pkinase 3.90E-64 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3666 K08789 - csv:101210442 1828.53