Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3667 ATGTCCGCCGAACCACCGCCCTCCGCCGCCGCCGATCACGATTCCTCCACCAAGCTCCCCCCCATCCCCATCCCCACCCGCCGCGATTCCGATCGAGAAGAACGCGTCCCTCATCAACCTGAAAATTCCTCCATCGTCATGGCCGCCTCCCTCGGGCTGAACCACATCCGGGTCCGGTCTGCTTCTCTGCCGCTCGGAACCTCCGCCATTGTTGCGCCCTCCATTTTGGGCGACGATTCCAGGAATAATGTCGCCAGTTCTGAAACGAAAGTTTCCTCCACTGAAACGGGGAACAAAATTCTGCGGAGTCAATCGAAATCGCTTAGGTACCCGTCTGATCCGGATTATGATTCTGAGGGTCACCATGCTGCTTGTTCGAAGGAAATTCGGTCTCCGAGATTTCGTGCAATACTTCGTGTCACTAGTGGAAAAAAGAAGAAAACCCCTGATATCAAAAGCTTCTCTCACGAGCTTAATTCGAAAGGAGTTCGCCCTTTTCCCGTTTGGAGGCCTCGGGCATTTCGACATTTGGAAGAGACCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTTAATTACGAACTGGGTATTTTTGCTGGAGATCTTGTAGATGTGCTTGTAAAGACAGATCCGTCTATGACTGAACTTAAAGAGGGTTTGGAGGATTTATTGGTGGTTTCTCGAAAATGTGCTACCATGTCGCCTTCTGAATTTTGGACGAAAGGGGAAGGGATTGTCCAGAATCTAGACGACCGGCGCCAGGAGCTGTCGTTTGGAATTCTTAAACAAGCCCACACCCGCCTTCTTTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGATCACATTTTGAGTCTTCACAAGCTTAGTGATCTAGGTATTTATCCAGAGAAACTTAGGCAGCTAGAACAACTTGACTTTGGTGATCCATTGACTGGGAAAGAAGATATTGAGAAGCAGCCGAAGTTAGCTGGGAAGGATCAAGCTCGGCGCAATGTAAAGCAAGATTTAGATCAAAGTTGTAGTAATAGTGCTGGAAATGTTGTTTTGGACTCTGCCGTAAGTATTGATTCGTCTTCAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAAAACCGGAAAGACTCTAACTCGACTGATTCCACACCTTCCAAGAATAAACTTGAACTTTCGCATGTACATGAAGCTAAAACTGGGAGAAATAACCAACTAGATACCCCATCTAGTCATATTGAGCATTCAGAAGCACCATGTAAAGAACAAAAAGTATCTTGGGGCATATGGGATTATCATCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCAATTATTCATGTTGAGGAGCATTCTCGGATATGCACAATGGCCGATAGGTGTGATTTGAAAGGTTTAACCGTGAACGAGCGCCTTGAACGGGTTGCTAGAGCTATTGAAAATATTCTAGAGTCTTGGACGCCTAAAACTACTCCAAGAAGTAGCGACACTTCCTGTGGAAATTTTGATACCGGTAAGGTATCTTCATCAAGTATGCAAGAAGAGACTCTTGAGTTTTCATCTAAAGGAATCAATTTGTCATGTCAAAACTCTGAAGATCTGCTTGATTCTCTCCCTGTTACTGGCAACTCTTCCTTTGTGGAAAGTCAGGATATATTTCCTGATCCATCATACAATCGTCCATTTATTTTCACACCAGATTACAGTACAAAATCAATGTCTGCTGGTAGTCTAACACCAAGATCACCTCTGTTAACACCCAGATCCAGCCAGATTGAATTGTTGTTGCATGGGCGCAGATCAATAACCGAACTTGAAAATTATCAGCAGATAAGCAAATTGTTGGATATTGTTCGTTCCATTGCAAACCTTAACAACTCTGACTATGGTGCATTGGAGTGTATGCTTGCTCGATTAGAAGACCTTAAATATGCAATCCAGGATAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTTTTGCAGGAAAAGTATGTACAACTTTGTGGGCAAATAGAAAATGATAAAGTAGACTTCTCAAATAGTACTGGAGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTTTGCGTGCAAGTCCTGTTAACCCATGTTCAAAAGATAGAACATCTATTGAAGATTTTGAAATAATCAAACCAATTAGTAGAGGGGCATACGGCCGAGTTTTCCTTGCTAAAAAAAGAGCAACTGGAGACTTATTTGCTATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGCAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGACATTTTCTCCTTACTGAAAAACTTAGGTTGCTTAGATGAAGAAATGGCTCGGATTTATATTGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACGTTAAGTTGACAGATTTTGGACTCTCCAAGATTGGACTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTGTTTCACTTGAAGACAATGGACCTACATCTCAATCTGCGTCAAAAAAAGAAAATGGACAAAAGCATTCAGTCGTTGGTACACCAGATTATTTGGCCCCTGAGATACTTCTAGGAATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGACTACCCCCATTCAATGCAGAAACTCCACAGAAAATTTTTGATAACATCATGAACAGAGACATACCATGGCCCAAGGTACCTGATGAAATGAGTTATGAAGCCCATGATTTGATTGACAAATTGTTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACAGGAGCCAGAGAGGTGAAGCGACATCCTTTCTTCAAGGATATTAATTGGGAAACACTTGCAAGACAGAAGGCAATGTTTATACCATCGGCAGAGGCACATGATACAAGTTATTTCATGAGTCGTTATATATGGAACCCAGAAGATGAGTATTTTAATGGTGGAAGTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATATAGCAACGTACAAGATGAAGAACTCTAA 3309 42.22 MSAEPPPSAAADHDSSTKLPPIPIPTRRDSDREERVPHQPENSSIVMAASLGLNHIRVRSASLPLGTSAIVAPSILGDDSRNNVASSETKVSSTETGNKILRSQSKSLRYPSDPDYDSEGHHAACSKEIRSPRFRAILRVTSGKKKKTPDIKSFSHELNSKGVRPFPVWRPRAFRHLEETMVAIRAKFDRLKDDVNYELGIFAGDLVDVLVKTDPSMTELKEGLEDLLVVSRKCATMSPSEFWTKGEGIVQNLDDRRQELSFGILKQAHTRLLFILTRCTRLIQFRKESGYEDDHILSLHKLSDLGIYPEKLRQLEQLDFGDPLTGKEDIEKQPKLAGKDQARRNVKQDLDQSCSNSAGNVVLDSAVSIDSSSSMYRMASWKKLPSAAEKNRKDSNSTDSTPSKNKLELSHVHEAKTGRNNQLDTPSSHIEHSEAPCKEQKVSWGIWDYHHQNATFENLMICRICEVEIPIIHVEEHSRICTMADRCDLKGLTVNERLERVARAIENILESWTPKTTPRSSDTSCGNFDTGKVSSSSMQEETLEFSSKGINLSCQNSEDLLDSLPVTGNSSFVESQDIFPDPSYNRPFIFTPDYSTKSMSAGSLTPRSPLLTPRSSQIELLLHGRRSITELENYQQISKLLDIVRSIANLNNSDYGALECMLARLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVQLCGQIENDKVDFSNSTGDEESSVEDDTVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLAKKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIFSLLKNLGCLDEEMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHVKLTDFGLSKIGLINSTDDFSGPSISGTVSLEDNGPTSQSASKKENGQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGLPPFNAETPQKIFDNIMNRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREVKRHPFFKDINWETLARQKAMFIPSAEAHDTSYFMSRYIWNPEDEYFNGGSDDHDLTDTCSSSSYSNVQDEEL 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65840884 65850699 - Sed0012555.2 Sed01g3667 702971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3667 1102 Gene3D Phosphorylase Kinase; domain 1 746 1063 - -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 385 436 - -
Sed01g3667 1102 FunFam probable serine/threonine protein kinase IREH1 746 835 - -
Sed01g3667 1102 FunFam AGC protein kinase 828 899 - -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 79 111 - -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 25 39 - -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 77 123 - -
Sed01g3667 1102 SMART serkin_6 748 1036 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3667 1102 MobiDBLite consensus disorder prediction 909 933 - -
Sed01g3667 1102 PANTHER SERINE/THREONINE-PROTEIN KINASE 454 1077 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed01g3667 1102 CDD STKc_MAST_like 754 1041 - -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 514 533 - -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 1 43 - -
Sed01g3667 1102 ProSiteProfiles Protein kinase domain profile. 748 1036 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3667 1102 MobiDBLite consensus disorder prediction 909 935 - -
Sed01g3667 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 867 879 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3667 1102 FunFam Serine/threonine protein kinase 15 927 1054 - -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 323 354 - -
Sed01g3667 1102 Gene3D Transferase(Phosphotransferase) domain 1 832 1054 - -
Sed01g3667 1102 Pfam Protein kinase domain 749 1036 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3667 1102 SUPERFAMILY Protein kinase-like (PK-like) 745 1064 IPR011009 -
Sed01g3667 1102 MobiDBLite consensus disorder prediction 323 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3667 Sed-Chr1:65840884 Sed05g0572 Sed-Chr5:4171466 0.00E+00 dispersed
Sed01g3666 Sed-Chr1:65839661 Sed01g3667 Sed-Chr1:65840884 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78728 PF00069 Pkinase 3.60E-64 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3667 K08789 - csv:101210442 1731.07