Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3683 ATGGATGAGAATGAGGGAATTGATTTCGGGTTTACGGTAAATGTGAATCAAGCTCCAGATAGCTTCGGGATGAAGATGATGGATTCGAGACCTGAAAATACAAGCTCAGACAGCGATTCACCGCCTCTGCCGGCGGCGGAGACGGCGGAAGCAGCTCTGGCGCTGCCGGAGATTGTTCCGTTGCCGGCGGGTACGGATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACCGCCCGGACGGGACTGGATCGCCACCATTGTTGCCAATGCCGATTTCGTCGTCGATTCCGCTGACCGGAGAGTTTCCGGGATGGAAAGGGGGAAGAGGGCGGTCAGTAGAGTCGATCAAGAAGTCGCGGAAGTACGATTATGAGATTCCAGGTAACATGGTTGTCTTCTTTTCTGGAGCAGATTTCACACCTCATGTGATCACGGTTAATGTTGGCGAGGATGTGAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCCATTTCTATACTCTCTGCTAATGGTATGGTTTCGAACGTCACACTTCGGCAGTCAACATCTTCTGGGGGTACTGTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATACATGCCGTCTGAAATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCTAGATGGCCGAGTGATGGGCGGAGGACTTGCTGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTCATACCTCCAGGTCATCAGCAGGAAAATAAACAAAGGAAAAGCAGGATGGAACCTACATCAACTGCAATTTCACCTCCTCCAGGCTGGAAGCCCATAGGAGATGATAATCCAGATTCTTTAGACCACAATCCAGCTTTTAGAACTCTACCAGTCAACGAAAAATCGCCCTTTCCAGAAGGTGTCCTTCACCATTCAAACCATGAGGTTTCTTGTTGA 978 49.69 MDENEGIDFGFTVNVNQAPDSFGMKMMDSRPENTSSDSDSPPLPAAETAEAALALPEIVPLPAGTDGKKKRGRPRKYRPDGTGSPPLLPMPISSSIPLTGEFPGWKGGRGRSVESIKKSRKYDYEIPGNMVVFFSGADFTPHVITVNVGEDVNLKVMSFSQQGSRAISILSANGMVSNVTLRQSTSSGGTVTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGLDGRVMGGGLAGMLIAAGPVQVVVGSFIPPGHQQENKQRKSRMEPTSTAISPPPGWKPIGDDNPDSLDHNPAFRTLPVNEKSPFPEGVLHHSNHEVSC 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65961070 65966564 - Sed0005821.1 Sed01g3683 702987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3683 325 FunFam AT-hook motif nuclear-localized protein 1-like 141 272 - -
Sed01g3683 325 CDD DUF296 140 254 IPR005175 -
Sed01g3683 325 ProSiteProfiles PPC domain profile profile. 136 275 IPR005175 -
Sed01g3683 325 Gene3D - 141 271 - -
Sed01g3683 325 MobiDBLite consensus disorder prediction 255 325 - -
Sed01g3683 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 266 - -
Sed01g3683 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 254 IPR005175 -
Sed01g3683 325 MobiDBLite consensus disorder prediction 1 92 - -
Sed01g3683 325 MobiDBLite consensus disorder prediction 28 42 - -
Sed01g3683 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 275 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3683 Sed-Chr1:65961070 Sed05g0581 Sed-Chr5:4236847 1.00E-98 dispersed
Sed01g3683 Sed-Chr1:65961070 Sed05g0580 Sed-Chr5:4236847 1.00E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3683 - - - 0.0