Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3718 ATGTTGCACATTGATGATGTTGAGTGGTTATCTCACCTTTCTTCCATACACTTCCTTGGCTTGGATGGGATGAACTTTTCAAAAGTTTTCAATATCATGCACATGTTCACTTCTCTTCCTTTATTGTCATCCTTATCATTGAGGTTTTGTAGTCTTCAAAACATTCATTTATCTTCGACTTCCTTCAATTCTTCGTTTGTTACTAGAGTTCAATATCTTGACTTGTCGTATAATGACTTCAACGCTCCAATTCCTAAGGCTTTCTACAACATGACTTCTTTGATATTCCTAGACCTTTCAGACAATTATTTCACTACCATTGAAGGTGGACTTCTATCTCTCATTGGAAATCGTTGTCGCCTTAAAGTATTTAATTTTAGGAACCATTTTGGTGGAGATCAATTGTTTGGAAGTTTTGATAATGAATCCACGGGTTGCAGTAGCTATGATCTTCAAGAGCTTGACTTCACATACACATCAATGAAAGAAAAAATTCCAGACTGGATAAGTAAGTTTAAAAACTTACGGTCACTTAATCTTGGAGGAAGTTTTATTTATGGTCCAATTCCTGCTTCACTTGGAAATTTATCAAGCCTTGAGTATTTAGGTCTTTGGAGGAATGCTCTAACGGGAACGATTCCCACTTCATTTGGAAGATTATCGAACTTGAGAGAATTACATCTCGGTCAAAACAGATTAGAGGAGGTGAGGGATGAATGTTTTATCCAACTTCAAAATTTGGAATGGTTGGACATATCTAACAACTTGCTCAAAGGTGGAAATGTTCCATCAAATCTCAGCAACTTCAATATAATGGCGGGAAAGATGATATCAAAAAGTTTTTTCTACCTTTGTATTACTCATAAGAATCCCAGTCAGTGCAAAGGAATTGGAAAAGAATTTGGCCAGGTTTTCAAATCAAGTTACTTCAATTACTCCTTGTCTCAGATAAGATCAATGAAGAATATAGACCTTTCTGTAAATTATTTGGTCGGTTTCATTCCAAATGAGATAATCATGCTTAAAGGGTTAGTTGGATTAAATTTATCTTACAACAATCTAACAGGGACAATCCCCACTAAAATAGGAAAAATGGAGTCATTAGAATCACTTGACTTATCTTTCAATCAACTTTCTGGACCAATTCCTCTAAGTATATCAGAACTAAATTCATTAGGTGTGTTGGAGTTATCTCACAACAATCTTTCCGGATATATTCCGAGAGAAGGTCACCTCTCCACATTCAACGAGGCTTCTAGTTTTGATGGAAATCCATATCTTTGTGGAGATCCACTTCCAGTAAAATGCTTGTCAAGCGAGAGTCCATTTGAGCCGCGATTGGAAATTCAGAAGGTAGATGAAGAGGAGGATAAATGGGAGAAATGGATGCTTTATATTATGATAATAGTTGGATACATAATTGGATTTTGGGTGGTGGTTGGATCTCTAATATTGAAGAGGAGTTGGAGATATGCTTATTTCAACTTTGTGGATGACACTAAATGCAAGCTTCAAGTAGCAATTTGGTGGACCATAAAATCGCTCAAAAGAATCTGA 1557 36.03 MLHIDDVEWLSHLSSIHFLGLDGMNFSKVFNIMHMFTSLPLLSSLSLRFCSLQNIHLSSTSFNSSFVTRVQYLDLSYNDFNAPIPKAFYNMTSLIFLDLSDNYFTTIEGGLLSLIGNRCRLKVFNFRNHFGGDQLFGSFDNESTGCSSYDLQELDFTYTSMKEKIPDWISKFKNLRSLNLGGSFIYGPIPASLGNLSSLEYLGLWRNALTGTIPTSFGRLSNLRELHLGQNRLEEVRDECFIQLQNLEWLDISNNLLKGGNVPSNLSNFNIMAGKMISKSFFYLCITHKNPSQCKGIGKEFGQVFKSSYFNYSLSQIRSMKNIDLSVNYLVGFIPNEIIMLKGLVGLNLSYNNLTGTIPTKIGKMESLESLDLSFNQLSGPIPLSISELNSLGVLELSHNNLSGYIPREGHLSTFNEASSFDGNPYLCGDPLPVKCLSSESPFEPRLEIQKVDEEEDKWEKWMLYIMIIVGYIIGFWVVVGSLILKRSWRYAYFNFVDDTKCKLQVAIWWTIKSLKRI 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66270811 66273105 - Sed0019618.1 Sed01g3718 703022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3718 518 SMART LRR_typ_2 91 114 IPR003591 -
Sed01g3718 518 SMART LRR_typ_2 220 243 IPR003591 -
Sed01g3718 518 SMART LRR_typ_2 196 219 IPR003591 -
Sed01g3718 518 SMART LRR_typ_2 244 269 IPR003591 -
Sed01g3718 518 SMART LRR_typ_2 39 64 IPR003591 -
Sed01g3718 518 SMART LRR_typ_2 365 389 IPR003591 -
Sed01g3718 518 Pfam Leucine Rich Repeat 70 91 IPR001611 GO:0005515(InterPro)
Sed01g3718 518 Pfam Leucine Rich Repeat 174 196 IPR001611 GO:0005515(InterPro)
Sed01g3718 518 PANTHER LRR RECEPTOR-LIKE KINASE 2 180 IPR052938 -
Sed01g3718 518 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 312 436 - -
Sed01g3718 518 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 146 236 - -
Sed01g3718 518 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515(InterPro)
Sed01g3718 518 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515(InterPro)
Sed01g3718 518 PRINTS Leucine-rich repeat signature 389 402 - -
Sed01g3718 518 PRINTS Leucine-rich repeat signature 368 381 - -
Sed01g3718 518 SUPERFAMILY RNI-like 8 129 - -
Sed01g3718 518 Gene3D Ribonuclease Inhibitor 2 442 IPR032675 -
Sed01g3718 518 SUPERFAMILY L domain-like 146 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3718 K13466 - - csv:101217369 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3601 Sed-Chr1:65165381 Sed01g3718 Sed-Chr1:66270811 1.30E-28 dispersed
Sed01g3718 Sed-Chr1:66270811 Sed13g0560 Sed-Chr13:3889555 1.10E-14 dispersed
Sed01g3716 Sed-Chr1:66256578 Sed01g3718 Sed-Chr1:66270811 3.90E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g822 . . . . . . . . . . . . . . Sed01g3718 . . Bhi01g01562 Tan01g0804 Cmetu09g0373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143