Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3720 ATGGCTCAAAAGCTTCATTTTTGCATCATTTTCATATCTCTTTCCATTTTATCAACAATCTCCCCATCTTTCTCAGCTCCAAACGCTGTAGATATATGGTGCAACCAAACCCCATATCCCGACGTTTGTAAGCACTTCTTCAAAGGCAAATTCGACCCGAAAAAGCTCTCCGATTTCAAGAAATCGGGGCTCAAAATCGCCATGGAAAGAGCTCTCACAGCCGAGACGCGAACCAAAGAGCACGGCCGAAAATGCCGAAGCCATAAGGAGAAAGCTGCATGGACGGATTGCATGGAGCTTTACCAAAACATAATCCTCCAACTCAACCAAACCGTCTCCGACCAATGCTCCGATTTCGACATCCAAACGTGGCTCAGCTCCGCGTTGACTAACCTCGAGACATGTCGGACCGGGTTCGTCGACCTTAATATCAAGGACTACGACATCAATTACCCGTTCTTGGCGAGTAGTAATGTGAGCAAGCTTATTAGTAATAGTTTGGCAATGAATAACTGCTCGGGGACGGAGACGGGATACCATGAGGGGTTTCCGAGGTGGGTTAACGCGGGAGCGCGGAGGCTGCTGCAGGCGGCTTCACCAAAGGCGGACTTGGTGGTGGCGTTGGATGGATCGGGGAATTATCGGACCGTGCAGGCGGCGGTGGACGCAGCGGGGAAGAGGAAAGGGAGTGGGAGGTTTGTGATATATGTGAAGAGAGGGGTTTATAAGGAGAATGTTGTGATTGGGAATAAAGTGAAGAATTTGATGCTTGTTGGAGATGGAATGAAGTATACTATTATTACTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTTAACTCTGCTACTGTTGCCGTAACGGGAGAAGGCTTCATCGCCCGTGGCATCACATTCCGCAACACAGCCGGACCCCAAAACCACCAGGCAGTAGCCCTCCGCTCCGGTTCCGATCTCTCCGTCTTCTACCGCTGCGGTTTCGAAGGATATCAAGACACCCTCTACGTCCACTCTCAAAGACAATTCTACCGAGAATGCTACATCTACGGTACCGTCGACTTCATCTTCGGCAACGCAGCCGTGGTTCTCCAAAACTGCATGATCTACGCAAGAAAACCAATGAAAGGGCAGCAATGCGTGGTCACAGCGCAAGGCCGAACGGACCCCAACCAGAACACCGGAATCTCGATCCACAACTCGAGAGTGATGGCCTCGGACGACTTGAAACCGGCGATAAGCTCGGTGAGAACCTACTTGGGGAGGCCGTGGAAGGAGTACTCTCGCACGGTTTACTTGCAAACGTTCATGGATAGCTTAGTGAACCCTGCAGGGTGGTTGGAATGGAGTGGTAATTTTGCTCTTAATACATTGTATTATGGAGAGTTTAAGAACTTTGGGCCTGGTTCTTCTACTGCTAAGAGAGTTAAATGGAAGGGTTATAGAGTAATTACAAGTGTGACAGAAGCTTCTAAGTTTACTGTTGGGAATTTTGTTGCTGGGAGTTCTTGGTTGCCTGCCACTGGTGTTCCATTCAATGCTGGGCTTTAA 1548 49.16 MAQKLHFCIIFISLSILSTISPSFSAPNAVDIWCNQTPYPDVCKHFFKGKFDPKKLSDFKKSGLKIAMERALTAETRTKEHGRKCRSHKEKAAWTDCMELYQNIILQLNQTVSDQCSDFDIQTWLSSALTNLETCRTGFVDLNIKDYDINYPFLASSNVSKLISNSLAMNNCSGTETGYHEGFPRWVNAGARRLLQAASPKADLVVALDGSGNYRTVQAAVDAAGKRKGSGRFVIYVKRGVYKENVVIGNKVKNLMLVGDGMKYTIITGSRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPMKGQQCVVTAQGRTDPNQNTGISIHNSRVMASDDLKPAISSVRTYLGRPWKEYSRTVYLQTFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTAKRVKWKGYRVITSVTEASKFTVGNFVAGSSWLPATGVPFNAGL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66293453 66296428 + Sed0017818.1 Sed01g3720 703024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3720 515 Gene3D - 197 515 IPR012334 -
Sed01g3720 515 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Sed01g3720 515 FunFam Pectinesterase 197 515 - -
Sed01g3720 515 PANTHER PECTINESTERASE 7 506 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed01g3720 515 SMART PMEI_2 25 169 IPR006501 GO:0004857(InterPro)
Sed01g3720 515 Pfam Pectinesterase 203 500 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed01g3720 515 CDD PMEI-like_3 33 171 - -
Sed01g3720 515 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Sed01g3720 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 172 IPR035513 -
Sed01g3720 515 NCBIfam pectinesterase inhibitor domain 6 171 IPR006501 GO:0004857(InterPro)
Sed01g3720 515 Pfam Plant invertase/pectin methylesterase inhibitor 29 169 IPR006501 GO:0004857(InterPro)
Sed01g3720 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 172 IPR035513 -
Sed01g3720 515 SUPERFAMILY Pectin lyase-like 199 514 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3720 Sed-Chr1:66293453 Sed07g1118 Sed-Chr7:8229726 1.20E-199 dispersed
Sed01g3720 Sed-Chr1:66293453 Sed02g1571 Sed-Chr2:51316048 1.20E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3720 K01051 - csv:101216005 837.795