Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3722 | ATGGCTTCCATTGACGACGCTTCGACCTTAGATTTAATCAGACAACACTTGCTCCACGATTTCACCTCCATCGAATCCTTCGCTTCAAATCTTGAAATCGGACCCCAAATCCCCAAATCCCCTTCAAAGGTCGCCCACCGGCGGCCGTCGCTCAACGTCGCGATTCCACCCAAGAGCTACACGGCGGGATCCGAGGCAAAACCGGAGGTGGGTCTGAACCAGCATTACAGGGGAGTCCGCCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGACCCAAACAAGCGTGGGGCGCGCGTTTGGCTTGGAACCTACGATACCGCCATTGAAGCGGCGAGGGCTTACGACAGAGCTGCTTTCAAGATGAGGGGAAGTAAAGCGATTCTGAATTTTCCTCTGGAGGCCGTGAAGGAGGCGGAGGAGCCGCCGTGTAGGGAGGCGGATGGCCGGAAACGGAGGAGGGAGAGTGAGGTTGTGGAAATGGAGAGCAAGTTTGTGAAGGAGGAGGTGTCGTCGGAGACGAATGAGATCGGAGCTCCGGCGGCCGTTTGTCCGTTAACGCCGTCTTGTTGGGCGTCCGTTTGGGATTGTGATATGAAGGGGATATTTAGCGTGCCGCCGTTATCGCCGTATCCGATTCAATGCACCGTTATATAA | 660 | 56.67 | MASIDDASTLDLIRQHLLHDFTSIESFASNLEIGPQIPKSPSKVAHRRPSLNVAIPPKSYTAGSEAKPEVGLNQHYRGVRRRPWGKFAAEIRDPNKRGARVWLGTYDTAIEAARAYDRAAFKMRGSKAILNFPLEAVKEAEEPPCREADGRKRRRESEVVEMESKFVKEEVSSETNEIGAPAAVCPLTPSCWASVWDCDMKGIFSVPPLSPYPIQCTVI | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 66319560 | 66320442 | + | Sed0007719.1 | Sed01g3722 | 703026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3722 | 219 | Pfam | AP2 domain | 75 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3722 | 219 | PRINTS | Ethylene responsive element binding protein signature | 76 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3722 | 219 | PRINTS | Ethylene responsive element binding protein signature | 115 | 135 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3722 | 219 | FunFam | Ethylene-responsive transcription factor 2 | 74 | 135 | - | - | |
Sed01g3722 | 219 | ProSiteProfiles | AP2/ERF domain profile. | 75 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3722 | 219 | SMART | rav1_2 | 75 | 139 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3722 | 219 | CDD | AP2 | 74 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3722 | 219 | Gene3D | AP2/ERF domain | 74 | 135 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g3722 | 219 | PANTHER | DNA-BINDING DOMAIN | 57 | 157 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Sed01g3722 | 219 | SUPERFAMILY | DNA-binding domain | 75 | 134 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3722 | Sed-Chr1:66319560 | Sed04g1681 | Sed-Chr4:31501024 | 9.80E-37 | dispersed | |
Sed01g3722 | Sed-Chr1:66319560 | Sed01g3723 | Sed-Chr1:66330906 | 8.90E-30 | tandem | |
Sed01g3722 | Sed-Chr1:66319560 | Sed05g0612 | Sed-Chr5:4455048 | 1.60E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37393 | PF00847 | AP2 | 7.70E-17 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3722 | K09286 | - | csv:101221306 | 284.648 |