Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3722 ATGGCTTCCATTGACGACGCTTCGACCTTAGATTTAATCAGACAACACTTGCTCCACGATTTCACCTCCATCGAATCCTTCGCTTCAAATCTTGAAATCGGACCCCAAATCCCCAAATCCCCTTCAAAGGTCGCCCACCGGCGGCCGTCGCTCAACGTCGCGATTCCACCCAAGAGCTACACGGCGGGATCCGAGGCAAAACCGGAGGTGGGTCTGAACCAGCATTACAGGGGAGTCCGCCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGACCCAAACAAGCGTGGGGCGCGCGTTTGGCTTGGAACCTACGATACCGCCATTGAAGCGGCGAGGGCTTACGACAGAGCTGCTTTCAAGATGAGGGGAAGTAAAGCGATTCTGAATTTTCCTCTGGAGGCCGTGAAGGAGGCGGAGGAGCCGCCGTGTAGGGAGGCGGATGGCCGGAAACGGAGGAGGGAGAGTGAGGTTGTGGAAATGGAGAGCAAGTTTGTGAAGGAGGAGGTGTCGTCGGAGACGAATGAGATCGGAGCTCCGGCGGCCGTTTGTCCGTTAACGCCGTCTTGTTGGGCGTCCGTTTGGGATTGTGATATGAAGGGGATATTTAGCGTGCCGCCGTTATCGCCGTATCCGATTCAATGCACCGTTATATAA 660 56.67 MASIDDASTLDLIRQHLLHDFTSIESFASNLEIGPQIPKSPSKVAHRRPSLNVAIPPKSYTAGSEAKPEVGLNQHYRGVRRRPWGKFAAEIRDPNKRGARVWLGTYDTAIEAARAYDRAAFKMRGSKAILNFPLEAVKEAEEPPCREADGRKRRRESEVVEMESKFVKEEVSSETNEIGAPAAVCPLTPSCWASVWDCDMKGIFSVPPLSPYPIQCTVI 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66319560 66320442 + Sed0007719.1 Sed01g3722 703026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3722 219 Pfam AP2 domain 75 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3722 219 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3722 219 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3722 219 FunFam Ethylene-responsive transcription factor 2 74 135 - -
Sed01g3722 219 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3722 219 SMART rav1_2 75 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3722 219 CDD AP2 74 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3722 219 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3722 219 PANTHER DNA-BINDING DOMAIN 57 157 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed01g3722 219 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3722 Sed-Chr1:66319560 Sed04g1681 Sed-Chr4:31501024 9.80E-37 dispersed
Sed01g3722 Sed-Chr1:66319560 Sed01g3723 Sed-Chr1:66330906 8.90E-30 tandem
Sed01g3722 Sed-Chr1:66319560 Sed05g0612 Sed-Chr5:4455048 1.60E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37393 PF00847 AP2 7.70E-17 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3722 K09286 - csv:101221306 284.648