Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3728 ATGCTCAAATTAATCCTCCTAGTTGCTTCGGCCACCATTTTTGTTCTTCTCCTAATTTCCCTCTTCTTTTTCCGCCACAAGCTCTCGAAAAAACCCCACAGAAACGACGTCGAGAAGCCACCAGTCACGGCGGCGGCAGCGGCGGAGGCTAAGGAGGAGCTGACGACGTTTTCCGGCGGCGAGGATTTGACGATCGGCGAGATTCTAGAAGCTCCCGGAGAAGTGATCGGAAAATCGCATTACGGTACTCTGTACAAGGCCTCGTTACAGAGCAGCCAGAGGATCAGGCTGCTGAGATTTCTCCGGCCGGCCGCCGTGGAAGATTCCGGCGTGGTTCGGTTTCTAGGTTCGATTCGGCACCGGAATTTGGTGCCGTTGCTGGGATTTTACGCCGGCGGGAGGGGCGAGCGGCTTCTGGTTCATCCATTTTACGGCGGAGGGAATCTGTCGGAGTTCATTACTGGCGAAGAATCAGAGTCAAAAAATTGGGAAACGATTTCCAAAATCTCCCTCGGAATCGCAAAAGCCCTAGATCATCTTCACCACGGATTACCAAAACCAGTACCCCACGGAAATCTCAAGTCCAAGAACGTTCTTCTCGATCTCAATTTCGAGCCCCACGTCTCCGATTTCGGCCTCCACCTCCTCCTCAACGCCGCCGCCACTCGCCAAATGCTCCAGCTCTCCGCCGCCTCCGGCTACAACGCGCCGGAGCTGGTCCACATGACCGGCGCCGACGAACGGACTGACATCTTCAGCTACGGCAGGATCCTACTGGAGTTGCTCTCCGCTACGGATCTGGTGGATCGAAATGCGGTTGCTAGCGGCGGAGACTGCGGCGAGCGGAATCTCCGGTGCCTTTTTCAGATCGGTGAGGCCTGTTGCTCTTCTTCGCCAGTTCTTCGGCCGGCTTTCAAGGAAGTGATTGAGAAGATTGAAAAACTCGGAAGGATTGAGATGGATTAG 966 54.97 MLKLILLVASATIFVLLLISLFFFRHKLSKKPHRNDVEKPPVTAAAAAEAKEELTTFSGGEDLTIGEILEAPGEVIGKSHYGTLYKASLQSSQRIRLLRFLRPAAVEDSGVVRFLGSIRHRNLVPLLGFYAGGRGERLLVHPFYGGGNLSEFITGEESESKNWETISKISLGIAKALDHLHHGLPKPVPHGNLKSKNVLLDLNFEPHVSDFGLHLLLNAAATRQMLQLSAASGYNAPELVHMTGADERTDIFSYGRILLELLSATDLVDRNAVASGGDCGERNLRCLFQIGEACCSSSPVLRPAFKEVIEKIEKLGRIEMD 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66358454 66361581 + Sed0007058.1 Sed01g3728 703032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3728 321 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3728 321 Gene3D Transferase(Phosphotransferase) domain 1 67 321 - -
Sed01g3728 321 ProSiteProfiles Protein kinase domain profile. 70 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3728 321 SUPERFAMILY Protein kinase-like (PK-like) 73 313 IPR011009 -
Sed01g3728 321 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 263 IPR052451 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3728 Sed-Chr1:66358454 Sed07g0201 Sed-Chr7:1717943 9.60E-41 dispersed
Sed13g0263 Sed-Chr13:1717854 Sed01g3728 Sed-Chr1:66358454 7.30E-82 transposed
Sed01g3728 Sed-Chr1:66358454 Sed05g0620 Sed-Chr5:4470250 5.00E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78735 PF07714 PK_Tyr_Ser-Thr 1.70E-21 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3728 - - - 0.0