Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3728 | ATGCTCAAATTAATCCTCCTAGTTGCTTCGGCCACCATTTTTGTTCTTCTCCTAATTTCCCTCTTCTTTTTCCGCCACAAGCTCTCGAAAAAACCCCACAGAAACGACGTCGAGAAGCCACCAGTCACGGCGGCGGCAGCGGCGGAGGCTAAGGAGGAGCTGACGACGTTTTCCGGCGGCGAGGATTTGACGATCGGCGAGATTCTAGAAGCTCCCGGAGAAGTGATCGGAAAATCGCATTACGGTACTCTGTACAAGGCCTCGTTACAGAGCAGCCAGAGGATCAGGCTGCTGAGATTTCTCCGGCCGGCCGCCGTGGAAGATTCCGGCGTGGTTCGGTTTCTAGGTTCGATTCGGCACCGGAATTTGGTGCCGTTGCTGGGATTTTACGCCGGCGGGAGGGGCGAGCGGCTTCTGGTTCATCCATTTTACGGCGGAGGGAATCTGTCGGAGTTCATTACTGGCGAAGAATCAGAGTCAAAAAATTGGGAAACGATTTCCAAAATCTCCCTCGGAATCGCAAAAGCCCTAGATCATCTTCACCACGGATTACCAAAACCAGTACCCCACGGAAATCTCAAGTCCAAGAACGTTCTTCTCGATCTCAATTTCGAGCCCCACGTCTCCGATTTCGGCCTCCACCTCCTCCTCAACGCCGCCGCCACTCGCCAAATGCTCCAGCTCTCCGCCGCCTCCGGCTACAACGCGCCGGAGCTGGTCCACATGACCGGCGCCGACGAACGGACTGACATCTTCAGCTACGGCAGGATCCTACTGGAGTTGCTCTCCGCTACGGATCTGGTGGATCGAAATGCGGTTGCTAGCGGCGGAGACTGCGGCGAGCGGAATCTCCGGTGCCTTTTTCAGATCGGTGAGGCCTGTTGCTCTTCTTCGCCAGTTCTTCGGCCGGCTTTCAAGGAAGTGATTGAGAAGATTGAAAAACTCGGAAGGATTGAGATGGATTAG | 966 | 54.97 | MLKLILLVASATIFVLLLISLFFFRHKLSKKPHRNDVEKPPVTAAAAAEAKEELTTFSGGEDLTIGEILEAPGEVIGKSHYGTLYKASLQSSQRIRLLRFLRPAAVEDSGVVRFLGSIRHRNLVPLLGFYAGGRGERLLVHPFYGGGNLSEFITGEESESKNWETISKISLGIAKALDHLHHGLPKPVPHGNLKSKNVLLDLNFEPHVSDFGLHLLLNAAATRQMLQLSAASGYNAPELVHMTGADERTDIFSYGRILLELLSATDLVDRNAVASGGDCGERNLRCLFQIGEACCSSSPVLRPAFKEVIEKIEKLGRIEMD | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 66358454 | 66361581 | + | Sed0007058.1 | Sed01g3728 | 703032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3728 | 321 | Pfam | Protein tyrosine and serine/threonine kinase | 74 | 311 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3728 | 321 | Gene3D | Transferase(Phosphotransferase) domain 1 | 67 | 321 | - | - | |
Sed01g3728 | 321 | ProSiteProfiles | Protein kinase domain profile. | 70 | 321 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3728 | 321 | SUPERFAMILY | Protein kinase-like (PK-like) | 73 | 313 | IPR011009 | - | |
Sed01g3728 | 321 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 4 | 263 | IPR052451 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3728 | Sed-Chr1:66358454 | Sed07g0201 | Sed-Chr7:1717943 | 9.60E-41 | dispersed | |
Sed13g0263 | Sed-Chr13:1717854 | Sed01g3728 | Sed-Chr1:66358454 | 7.30E-82 | transposed | |
Sed01g3728 | Sed-Chr1:66358454 | Sed05g0620 | Sed-Chr5:4470250 | 5.00E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78735 | PF07714 | PK_Tyr_Ser-Thr | 1.70E-21 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3728 | - | - | - | 0.0 |