Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3729 ATGGAGGTGATGGAAGATGAAGCCTATAGAAATTTTATGTTGCCGCCTTCCCCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAAGAAAAACAGCAAACATATAATTAGGTGGTCATTGGCAAAATTTGTACCTGAGGGCATCATCAGTTACAAATTGCTACACATCATCCCAATGATTGCTAGTGTTCCAACTCCAATGGGAATTGCAATTCCAATTTCACAAGCTCGTGATGATGTTGCTGTGGCTTATAGAAAAGAAATCGGATGGCAGACGAGTCAAAAGCTTCTTCCATATAAGAACATGTTTGCTCAAAGAAAGGTTCAAGTTGATGTTGTGACTCTTGAAGCAGATGATGTGGCAAATGCAATAATAGAAGAGGCTACTAAGTGTTCGATCAACAAGCTTGTTATAGGAGTTTCGTCACAGGGACTTTTCTCAAGGAAATTAAACGGGGTATCCTCAAGAATATCAGCCCTTGCACCTAGAAATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGACCACCTGACGTGGAGACAAACGCGAACGTTAAAGATGATTTGAGTGAAGCAACTTCAGCAAACAGCTACTCAAGTTATTCTTCTAGCTCACTTACAGATAGCAGTTCAAGCTTAATTACATCCTACTCTCATTTCCCTTCTCCTTCTCCTTCCCTACCATTACAACGATTTCAAGCTCTTACAGCCATTAATCAATCTATTCTTACAAAGAAAACTAGCCCCATTATACCCAACCATTCTAGATGTCAATCCATTGATATCGAGGAGCAGGCGGACGGCATTTGCTCTTCTTCATATGTTTCAGATTGCGCGCAAACATTGAGTAAAGCCTCTAGTTGTAAAACCTTGCCAACAGACTACCAGTCTTCGGTTTCAGATGAAGCTTCATCCTCAGGCGCGTTCAATGATTATTCTTCATGTGAAAGTCAGACGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACACGCAAGAGGAATGTATGCAATTGCTCAACAAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATCGGAGGAAGCCAAGAAGCTTGAAGAGATCATTAATAAAGAAGAGGCCGCCAAAGAATTCGCGAGGGAAGAGAGAGCGAACCTTAAAGCTGTGAGAAGAGAAGCAAAGTATGTAAAAGAATGCGCCGAGAGAGAGGGCATGTATAGGAAGGATGCAGAGACAAAAGCTCTTCAAGATGCAAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAGCAATACCAACAGTTTCAGTGGGAAGATATTGTTTCTGCTACAGCATCTTTCTCTGAAGATCTTAAGATTGGAATGGGAGCACATGGTACAGTTTATAAGTGCAGTTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCAAGAGATGGTCGCAAAAAGGTGCAATTTCTCCAGGAGCTTGAAATCTTGAGCAAAATCCATCATCCCCATCTACTACTACTACTCGGTGCATGTCTGGAGAAGAATTGCCTGGTTTATGAGTACATGGTAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGGAAATACACATGCAATCCCATGGTATGAGAGGTATCGAATTGCCTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACACCTCAAAGCCGAAACCGATAATCCACCGTGATCTTAAGCCTGCAAACATCTTACTTGACCAAAACCTTGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTGATTCAGATCCTTTTATGTCTACTGCATTCAAGGATAGTGGACCAGTTGGGACTCTCTGTTACATAGATCCCGAGTATCAACGAACTGGATTAGTCTCACCTAAGTCTGATGTGTATGCTTTTGGATTGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTGGTGGAAACAGCCATTGATAACAACAGTTTAATAAAGGTTCTAGATATAGAGGCTGGGCATTGGCCTGTCGAAGAGACGTATGAATTGGCGAGATTAGGACTTCGCTGCGCAGAGCTGCAACGTAAAGATAGGCCCAACTTAGAGGATCAAGTACTTCCCTTGTTGCTGACACTGAAAAAGATTGCTGATGAGGCTAGCAGTTCAGCTTCCAGAGTTCCAGCTGCCATTCCTAATCATTTCATCTGTCCAATTCTTCAGGACGTGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATAGAGAAGTGGCTTCGAGAGAACGATATCTCACCCGTGACGATGTTGCCACTGCCAGATAAGAATTTAATATCAAATTATAGCCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTAA 2430 42.59 MEVMEDEAYRNFMLPPSPSPVVAVAISGKKNSKHIIRWSLAKFVPEGIISYKLLHIIPMIASVPTPMGIAIPISQARDDVAVAYRKEIGWQTSQKLLPYKNMFAQRKVQVDVVTLEADDVANAIIEEATKCSINKLVIGVSSQGLFSRKLNGVSSRISALAPRNCTVYAISKGKLASIRPPDVETNANVKDDLSEATSANSYSSYSSSSLTDSSSSLITSYSHFPSPSPSLPLQRFQALTAINQSILTKKTSPIIPNHSRCQSIDIEEQADGICSSSYVSDCAQTLSKASSCKTLPTDYQSSVSDEASSSGAFNDYSSCESQTDVNFELEKLRIELRHARGMYAIAQQETIDASRKLNHLNKQRSEEAKKLEEIINKEEAAKEFAREERANLKAVRREAKYVKECAEREGMYRKDAETKALQDAKEKGKHENALQGPLQQYQQFQWEDIVSATASFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDGRKKVQFLQELEILSKIHHPHLLLLLGACLEKNCLVYEYMVNGSLEDRLYRRGNTHAIPWYERYRIAWEIASALVFLHTSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFDSDPFMSTAFKDSGPVGTLCYIDPEYQRTGLVSPKSDVYAFGLVILQLLTAKPAVALTHVVETAIDNNSLIKVLDIEAGHWPVEETYELARLGLRCAELQRKDRPNLEDQVLPLLLTLKKIADEASSSASRVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEKWLRENDISPVTMLPLPDKNLISNYSLLSAIVEWNSRKN 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66362861 66371105 - Sed0008681.1 Sed01g3729 703033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3729 809 Coils Coil 357 395 - -
Sed01g3729 809 Coils Coil 329 349 - -
Sed01g3729 809 Gene3D Phosphorylase Kinase; domain 1 425 528 - -
Sed01g3729 809 SMART Ubox_2 742 804 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g3729 809 ProSiteProfiles U-box domain profile. 738 809 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g3729 809 CDD STK_N 21 173 - -
Sed01g3729 809 ProSitePatterns Protein kinases ATP-binding region signature. 462 483 IPR017441 GO:0005524(InterPro)
Sed01g3729 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3729 809 Pfam U-box domain 739 808 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g3729 809 CDD RING-Ubox_WDSUB1-like 740 794 - -
Sed01g3729 809 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 167 - -
Sed01g3729 809 SUPERFAMILY RING/U-box 726 807 - -
Sed01g3729 809 Gene3D Transferase(Phosphotransferase) domain 1 529 736 - -
Sed01g3729 809 ProSiteProfiles Protein kinase domain profile. 456 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3729 809 Gene3D HUPs 22 168 IPR014729 -
Sed01g3729 809 SMART serkin_6 456 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3729 809 Pfam Protein tyrosine and serine/threonine kinase 461 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3729 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 738 809 IPR013083 -
Sed01g3729 809 PANTHER OS02G0152300 PROTEIN 22 801 IPR051348 -
Sed01g3729 809 SUPERFAMILY Protein kinase-like (PK-like) 438 712 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3729 Sed-Chr1:66362861 Sed01g3731 Sed-Chr1:66362861 0.00E+00 dispersed
Sed01g3729 Sed-Chr1:66362861 Sed01g3730 Sed-Chr1:66362861 0.00E+00 tandem
Sed01g3729 Sed-Chr1:66362861 Sed05g0621 Sed-Chr5:4475665 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78736 PF07714 PK_Tyr_Ser-Thr 2.70E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3729 - - - 0.0