Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3744 | ATGGCGACGTCGGAATCGGAATGTGGAACGCCGGAGCAGTCGGGGACGCCGGGGTCGCCGGGAAAGCCGCTGTTTTCGATGCGACGGGCGGATTCTCTGCCGTCGTTTAATAGTCGGAAGTCGATGCGTTACAACAACAAGTGCATGCCAATGAATGCTCCCACGTGGGGCCCTCCTAACACGTGCTTCACTCACTTCCCTGCTCCTGATATTTCTCTCAGCCGCAAGCTAGGAGCAGAATTTGTTGGCACATTCATCTTGATATTCTGTGCTACGGCAGCGCCCATCGTGAACCAAAAGTACGAGGGTGTGGAGGCTTTGATTGGAAACGCTGCATGTGGCGGGTTTGCCGTGATGGTCGTAATTCTGTCGACGGGACACATCTCGGGCGCGCACCTGAACCCGTCACTGACCATTGCCTTTGCCGCCCTCCTCTCCGCCTCCCTCTGCGCCTCCTTCGCTCTTAAAATTGTTTTCGACCCTTTTATGGCTGGCGGTGTCACGGTTCCCTCCGTTGGCATTGGCCAGGCCTTCGCTCTCGAATTCATAATGACTTTCATTCTCTTATTCGTCGTCACTGCGGTTGCTACTGATACTCGTGCGGTCGGAGAGATGGCCGGAATTGCCGTCGGAGCAACAGTAACGATGAACATTCTTGTGGCCGGACCCTCTAGCGGGGCCTCGATGAACCCGGTTCGAACATTGGGCCCCGCTATAGCTGCGGGAAATTTCAAAGCATTATGGGTATATATGGTGGCGCCGACGCTAGGGGCGATCTTTGGTGCGGCAACTTACACCGTCGTTAAGTTAAGAGACGAAGAATTGGATGCTGTGTCGCAGGTAGCGATCAGCTTCCGTCAGTGA | 864 | 55.09 | MATSESECGTPEQSGTPGSPGKPLFSMRRADSLPSFNSRKSMRYNNKCMPMNAPTWGPPNTCFTHFPAPDISLSRKLGAEFVGTFILIFCATAAPIVNQKYEGVEALIGNAACGGFAVMVVILSTGHISGAHLNPSLTIAFAALLSASLCASFALKIVFDPFMAGGVTVPSVGIGQAFALEFIMTFILLFVVTAVATDTRAVGEMAGIAVGATVTMNILVAGPSSGASMNPVRTLGPAIAAGNFKALWVYMVAPTLGAIFGAATYTVVKLRDEELDAVSQVAISFRQ | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 66498613 | 66501330 | - | Sed0014047.1 | Sed01g3744 | 703048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3744 | 287 | Gene3D | Glycerol uptake facilitator protein. | 68 | 279 | IPR023271 | - | |
Sed01g3744 | 287 | ProSitePatterns | MIP family signature. | 132 | 140 | IPR022357 | - | |
Sed01g3744 | 287 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed01g3744 | 287 | SUPERFAMILY | Aquaporin-like | 72 | 274 | IPR023271 | - | |
Sed01g3744 | 287 | PRINTS | Major intrinsic protein family signature | 114 | 138 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3744 | 287 | PRINTS | Major intrinsic protein family signature | 75 | 94 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3744 | 287 | PRINTS | Major intrinsic protein family signature | 180 | 198 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3744 | 287 | PRINTS | Major intrinsic protein family signature | 248 | 268 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3744 | 287 | PRINTS | Major intrinsic protein family signature | 211 | 233 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3744 | 287 | Pfam | Major intrinsic protein | 72 | 265 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3744 | 287 | PANTHER | AQUAPORIN NIP2-1 | 67 | 273 | IPR034294 | - | |
Sed01g3744 | 287 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3744 | Sed-Chr1:66498613 | Sed01g3746 | Sed-Chr1:66540267 | 5.90E-82 | dispersed | |
Sed01g3744 | Sed-Chr1:66498613 | Sed01g3745 | Sed-Chr1:66502974 | 1.40E-107 | tandem | |
Sed01g3744 | Sed-Chr1:66498613 | Sed05g0625 | Sed-Chr5:4519609 | 4.10E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3744 | K09874 | - | csv:101212651 | 401.364 |