Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3744 ATGGCGACGTCGGAATCGGAATGTGGAACGCCGGAGCAGTCGGGGACGCCGGGGTCGCCGGGAAAGCCGCTGTTTTCGATGCGACGGGCGGATTCTCTGCCGTCGTTTAATAGTCGGAAGTCGATGCGTTACAACAACAAGTGCATGCCAATGAATGCTCCCACGTGGGGCCCTCCTAACACGTGCTTCACTCACTTCCCTGCTCCTGATATTTCTCTCAGCCGCAAGCTAGGAGCAGAATTTGTTGGCACATTCATCTTGATATTCTGTGCTACGGCAGCGCCCATCGTGAACCAAAAGTACGAGGGTGTGGAGGCTTTGATTGGAAACGCTGCATGTGGCGGGTTTGCCGTGATGGTCGTAATTCTGTCGACGGGACACATCTCGGGCGCGCACCTGAACCCGTCACTGACCATTGCCTTTGCCGCCCTCCTCTCCGCCTCCCTCTGCGCCTCCTTCGCTCTTAAAATTGTTTTCGACCCTTTTATGGCTGGCGGTGTCACGGTTCCCTCCGTTGGCATTGGCCAGGCCTTCGCTCTCGAATTCATAATGACTTTCATTCTCTTATTCGTCGTCACTGCGGTTGCTACTGATACTCGTGCGGTCGGAGAGATGGCCGGAATTGCCGTCGGAGCAACAGTAACGATGAACATTCTTGTGGCCGGACCCTCTAGCGGGGCCTCGATGAACCCGGTTCGAACATTGGGCCCCGCTATAGCTGCGGGAAATTTCAAAGCATTATGGGTATATATGGTGGCGCCGACGCTAGGGGCGATCTTTGGTGCGGCAACTTACACCGTCGTTAAGTTAAGAGACGAAGAATTGGATGCTGTGTCGCAGGTAGCGATCAGCTTCCGTCAGTGA 864 55.09 MATSESECGTPEQSGTPGSPGKPLFSMRRADSLPSFNSRKSMRYNNKCMPMNAPTWGPPNTCFTHFPAPDISLSRKLGAEFVGTFILIFCATAAPIVNQKYEGVEALIGNAACGGFAVMVVILSTGHISGAHLNPSLTIAFAALLSASLCASFALKIVFDPFMAGGVTVPSVGIGQAFALEFIMTFILLFVVTAVATDTRAVGEMAGIAVGATVTMNILVAGPSSGASMNPVRTLGPAIAAGNFKALWVYMVAPTLGAIFGAATYTVVKLRDEELDAVSQVAISFRQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66498613 66501330 - Sed0014047.1 Sed01g3744 703048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3744 287 Gene3D Glycerol uptake facilitator protein. 68 279 IPR023271 -
Sed01g3744 287 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Sed01g3744 287 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g3744 287 SUPERFAMILY Aquaporin-like 72 274 IPR023271 -
Sed01g3744 287 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3744 287 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3744 287 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3744 287 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3744 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3744 287 Pfam Major intrinsic protein 72 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3744 287 PANTHER AQUAPORIN NIP2-1 67 273 IPR034294 -
Sed01g3744 287 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3744 Sed-Chr1:66498613 Sed01g3746 Sed-Chr1:66540267 5.90E-82 dispersed
Sed01g3744 Sed-Chr1:66498613 Sed01g3745 Sed-Chr1:66502974 1.40E-107 tandem
Sed01g3744 Sed-Chr1:66498613 Sed05g0625 Sed-Chr5:4519609 4.10E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3744 K09874 - csv:101212651 401.364