Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3745 ATGCCGGAATCGGAAAGTGGAACGCCGGCGGCGTCGGCGCCGGCGACGCCGGGAACGCCGGGAGGGCCGTTGTTTTCCGGGCTACGGGTAGATTCGCTGTCGTATGACCGAAAGTCAATGCCGCGGTGCAAGTGCCTGCCCGTAAATGCTCCCACGTGGGGCCATCCTCACACGTGCTTCACTGACTTTGCTGCGCCTGATATCTCTCTCACCCGCAAGCTAGGAGCAGAATTTGTGGGAACATTCATCTTGATATTTGCTGCAACGGCAGGGCCAATCGTGAACCAAAAGTACGGCGGCGTGGAGACTTTGATCGGAAACGCCGCATGCGCCGGCCTCGCCGTGATGATCGTAATTCTGTCAACGGGACACATCTCCGGCGCCCACCTGAACCCGTCGCTGACCATTGCCTTCGCCGCCCTCCGCCACTTCCCTTGGGTCCAAGTCCCCGCCTACATTGCTGCTCAAGTCTCCGCCTCCATTTGCGCCTCCTTCGCTCTTAAAGGTGTTTTTCACCCTTTCATGTCGGGCGGCGTCACCGTTCCCTCCGTTGGCATTGGCCAAGCCTTTGCTCTTGAGTTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACTGCCGTTGCCACTGATACTCGTGCGGTGGGAGAATTGGCGGGAATTGCAGTCGGAGCAACAGTGATGTTGAACATTCTTGTGGCCGGGCCCTCTAGTGGTGGTTCGATGAACCCAGTTCGAACATTGGGCCCTGCCGTGGCAGCAGGGAATTACCGGGCATTATGGGTGTATCTAGTGGCGCCGACGCTTGGGGCGATCGTCGGTGCTGGAACGTACACCGTCGTGAAGCTGAGAGACGACGAAGTAGAGGTTCCATCGCAGGTAAGGAGCTTTCGTCGTTGA 897 58.08 MPESESGTPAASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGHPHTCFTDFAAPDISLTRKLGAEFVGTFILIFAATAGPIVNQKYGGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVGIGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAIVGAGTYTVVKLRDDEVEVPSQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66502974 66508243 - Sed0018357.1 Sed01g3745 703049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3745 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3745 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3745 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3745 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3745 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3745 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3745 298 Gene3D Glycerol uptake facilitator protein. 64 293 IPR023271 -
Sed01g3745 298 FunFam Aquaporin NIP2-1 60 292 - -
Sed01g3745 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Sed01g3745 298 PANTHER AQUAPORIN NIP2-1 68 284 IPR034294 -
Sed01g3745 298 SUPERFAMILY Aquaporin-like 69 288 IPR023271 -
Sed01g3745 298 MobiDBLite consensus disorder prediction 1 24 - -
Sed01g3745 298 Pfam Major intrinsic protein 69 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3745 Sed-Chr1:66502974 Sed05g0625 Sed-Chr5:4519609 3.20E-147 dispersed
Sed01g3744 Sed-Chr1:66498613 Sed01g3745 Sed-Chr1:66502974 1.40E-107 tandem
Sed01g3745 Sed-Chr1:66502974 Sed01g3746 Sed-Chr1:66540267 1.00E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3745 K09874 - csv:101212651 545.814