Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3746 ATGTTAGAATCAGAAAGCGGAACATTTGTTTCGTCCACTTCAGCGAGGATAGGAACGACACCGAGAGAGTCATCGTTTTCGAGTCTTCGAGTTGATTCGTTGTTATATGATCGAAAGCCAATGTCGCAATTGGAGTGCTTACCCCTTGACATTACAAAGAGGAGCCAACCTCACATGTGCTTAACTCACTTTCCTACTCTTGATGTTTATCTGGCAAAAAAGGTGGGAGCAGAATTTGTTGGCACATTTATCCTAATATTCGCCGCAACCGCCGCACCAATCATCAACGAAAAGTACAACGCCGCCCTGTCTCCGATCGGAAACGCCGCGTACGCCGGAATAGCAGCGATGATCGTAATTATGTCGACGGGACACATCTCCGGCTCCCACCTGAACCCGTCGCTGACCATCGCCTTCGCCGCCCTCCGCCACTTCCCGTGGGGCCAAGTCCCTGCCTACATCGCCGCCCAAGTCTCCGCCTCGATCTGCGCCTCTTTCGCCCTCAAAGGCGTTTTTTACCCTTTCATGTCCGGCGGCGCCACCGCTCCCTCCGTCGGCACCGCCCAGGCCTTCGCTCTTGAATTTCTCATCGCTTTCAATCTCTTGTTTGTTGTTACTGCCGTCGCTACTGATACTCGCGCCGTGGGAGAGTTGGCCGGAATTGCAGTTGGAGCTACAGTGATGCTTAATATTCTTATTGCTGGGCCATCCACTGGTGGTTCAATGAACCCAGTGCGGACTCTTGGCCCCGCCGTGGCGGCCGGAAATTACAGACAACTCTGGCTCTACATGGTGGCTCCTACCCTTGGGGCTGTCGCCGGCGCCGGAACCTACACGGCCGTGAAGCTTAAAGACGATGAAGTTACTAATGATCAATCTCTGCAGGTCAGGAGCTTCGGTCGATGA 906 53.64 MLESESGTFVSSTSARIGTTPRESSFSSLRVDSLLYDRKPMSQLECLPLDITKRSQPHMCLTHFPTLDVYLAKKVGAEFVGTFILIFAATAAPIINEKYNAALSPIGNAAYAGIAAMIVIMSTGHISGSHLNPSLTIAFAALRHFPWGQVPAYIAAQVSASICASFALKGVFYPFMSGGATAPSVGTAQAFALEFLIAFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAAGNYRQLWLYMVAPTLGAVAGAGTYTAVKLKDDEVTNDQSLQVRSFGR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66540267 66545260 + Sed0022438.1 Sed01g3746 703050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3746 301 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g3746 301 Pfam Major intrinsic protein 71 278 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3746 301 Gene3D Glycerol uptake facilitator protein. 53 295 IPR023271 -
Sed01g3746 301 PANTHER AQUAPORIN NIP2-1 64 286 IPR034294 -
Sed01g3746 301 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3746 301 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3746 301 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3746 301 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3746 301 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3746 301 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3746 301 FunFam Aquaporin NIP2-1 61 293 - -
Sed01g3746 301 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Sed01g3746 301 SUPERFAMILY Aquaporin-like 70 285 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3744 Sed-Chr1:66498613 Sed01g3746 Sed-Chr1:66540267 5.90E-82 dispersed
Sed01g3746 Sed-Chr1:66540267 Sed05g0625 Sed-Chr5:4519609 7.20E-115 dispersed
Sed01g3745 Sed-Chr1:66502974 Sed01g3746 Sed-Chr1:66540267 1.00E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3746 K09874 - csv:101212651 426.017