Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3751 ATGGGTTACAACAGAAGCGCCAAAAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAGCGCACAAAAGAAGGCCGTGGCGGCCGTCAAGATGGCAAAACCTACAAATTCTTCTCAGAACTCGAAGCCCTTCACAACGCTACCGCTACCGCCACCGCCGTCACCACCGCAACCTCACCGATCGGTTTTACAATAAGCAATCCGACTCCAATCTCATCGGTCAAAATGTTTTCACCTGCAGACAATTTCACAGTCAGGCCGCCGCCCGCGGCGACCCAAACTGGTGTCGGCATTTGGTCGAACACCTCATCTGCATCAACCGAAGACGAGGAAGAGGAAATGGGGTTTGATGTAGAGCCGTCGAGTGTCGGTGGGAGCAGCCGTAAGCGGCGGAGGGCGGTCGATGAGGGAAGCGGGTCGAGAACCCACACGATGATGATGGAGTTCTTCGAGGGTTTGATGAAGCAAGTGATGGATAAACAGGAAGTTATGCAGCAGAAGTTTTTGGAATCGGTTGAGAAGAGGGAAAGGGAGAGAATGATTAGAGAAGAGACATGGAAAAGGGAAGAAATGGACAGATTAAACCGTGAGAAAGAAGTAATGGCTCAAGAACGGACAATTTCTGGCTCTAGAGATTCTGCTATCATTGCTTTTCTTCAGAAATTTGCTGGCCAAACCATTGAATTACCTATGGTTGATATCAATCCTCCTATTTCTGCAGCCCCACAAAAACAACAATATGATGTGCCTGTGCCTGTGCCTGTACTGTCTGTGTCAGTGCCGTTGCCACTATCTCCTGTCCCCACTGAGCCACGAACTACTCTGCCACAACAACAACAGGATCAAATTATAGGCACCCAGGTTCAGAATCAGGCAATGCCATATCTAGAAACCAGACAAGGAGGTGGAGATGAAAGTTCAGAACCAATTTCTTCAAGATGGCCAAAACCAGAAGTTCTAGCTCTGATTAAGCTGAGGAGTGGGCTTGAATCTAGGTATCAAGAGGCATGTCCAAAGGGTCCTTTGTGGGAACAAATTTCAGCTCAAATGCATCAAATGGGTTACAAGAGAAATCCCAAAAGATGCAAGGAGAAATGGGAAAACATCAATAAGTACTACAAGAAAGTGAAGGAAAGCAATAAAATACGACGGGTGGATTCCAAGACCTGCCCCTATTTCGATGAACTCGACGCCCTTTACCGCAAAAAGATTCTCGGCAGTGGCGGCGATGGTGGTGGTGGCAGTGGTAGTAGAAGCTCGTTTAGCGATACGAGCAAATTCGATCGAGAACAACCGGCAAAGGCTCAATCTCAATCCACACTTGCTGAAGGCTTATCTGCAAGTCTCTTTGGTGAAGGAAATGAAGAACAGCAACCAGCAACATCCACGAAGAAGACATTGTGA 1410 47.09 MGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFSELEALHNATATATAVTTATSPIGFTISNPTPISSVKMFSPADNFTVRPPPAATQTGVGIWSNTSSASTEDEEEEMGFDVEPSSVGGSSRKRRRAVDEGSGSRTHTMMMEFFEGLMKQVMDKQEVMQQKFLESVEKRERERMIREETWKREEMDRLNREKEVMAQERTISGSRDSAIIAFLQKFAGQTIELPMVDINPPISAAPQKQQYDVPVPVPVLSVSVPLPLSPVPTEPRTTLPQQQQDQIIGTQVQNQAMPYLETRQGGGDESSEPISSRWPKPEVLALIKLRSGLESRYQEACPKGPLWEQISAQMHQMGYKRNPKRCKEKWENINKYYKKVKESNKIRRVDSKTCPYFDELDALYRKKILGSGGDGGGGSGSRSSFSDTSKFDREQPAKAQSQSTLAEGLSASLFGEGNEEQQPATSTKKTL 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66615867 66619229 + Sed0022401.2 Sed01g3751 703055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3751 469 MobiDBLite consensus disorder prediction 126 140 - -
Sed01g3751 469 FunFam Trihelix transcription factor GT-2 316 377 - -
Sed01g3751 469 Gene3D - 316 377 - -
Sed01g3751 469 Gene3D - 1 23 - -
Sed01g3751 469 ProSiteProfiles Myb-like domain profile. 308 372 IPR001005 -
Sed01g3751 469 MobiDBLite consensus disorder prediction 433 469 - -
Sed01g3751 469 PANTHER FI21293P1 1 425 - -
Sed01g3751 469 CDD GT1 314 379 - -
Sed01g3751 469 Pfam Myb/SANT-like DNA-binding domain 1 46 IPR044822 -
Sed01g3751 469 Pfam Myb/SANT-like DNA-binding domain 314 401 IPR044822 -
Sed01g3751 469 MobiDBLite consensus disorder prediction 90 142 - -
Sed01g3751 469 MobiDBLite consensus disorder prediction 409 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3751 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1410 Sed-Chr1:10437813 Sed01g3751 Sed-Chr1:66615867 5.20E-34 dispersed
Sed01g3751 Sed-Chr1:66615867 Sed05g0628 Sed-Chr5:4562801 6.60E-123 dispersed
Sed01g3750 Sed-Chr1:66615867 Sed01g3751 Sed-Chr1:66615867 6.00E-246 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37396 PF13837 Myb_DNA-bind_4 1.30E-22 CL0123 Sed TF