Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3758 ATGAGTTCCGGTGAAGATTGTTTGGGTTGGGCCGCCACAGATTCATCTGGCTTTTTATCTCCCTACAAATTCAGTCGCAGGGTTCCTGGAGATGATGATGTTTCAATTACAATAACACATTGCGGAGTTTGTTACGCAGATGTAATATGGACAAAAAATAAACACGGAGATGCAAAATATCCTTTGGTGCCCGGACATGAGATTGTAGGAATTGTGAAAAGCGTTGGCTCAAATGTTCAACGATTTAAAGTTGGAGATCATGTTGGTGTAGGAACTTACGTGAATTCTTGCAGACAATGCGAATATTGTGAAGATGGTCAAGAAGTTATTTGCACGAGAGGATCCACTTTTACTTTTAATGCAATTGATGTTGATGGTACGATTACAAAGGGAGGGTATTCGAACTACATAGTCGTCCACGAGAGATACTGCTACAAAATACCTGGCAATTATCCATTAGCTTCAGCTGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCAATGATTCGCCATAAGATGAATCAACCTGGCAAATCGCTTGGAGTGATTGGGCTTGGTGGTCTTGGCCACTTGGCTGTGAAGTTTGGGAAGGCGTTTGGACTGAATGTTACGGTTTTTAGCACTAGCATTTCCAAGAAAGAAGAAGCCTTGAGCGTTCTTGGAGCTGACAAATTTGTTATCTCATCTGAGAACGAGGAAATGGAGGCCTTGTCTAAGTCTCTTGACTTTATTATTGATGCTGCATCTGGTGATCACCCATTTGATCCATACATGTCTACTTTGAAGATTGGTGGCATTATGGTTTTGGTGGGGTTTCCTTCTCAAGTCAAGTTCAGTCCTGCAAGCCTAAATTTGGGTTTGAGAACCATTTCTGGTAGTGTAACTGGTGGCACTAAACTTACTCAAGAAATGCTTGATTTTTGTGCTGCTCATGGAATCTATCCAAACATAGAGGTGGTTCCAATTCAGTACTCTAATGAAGCAATCGAAAGGGTAATAAAGAACGACGTCAAGTACCGATTTGTAATCGATATCCAAGGCTCCCTAAAATGA 1059 41.27 MSSGEDCLGWAATDSSGFLSPYKFSRRVPGDDDVSITITHCGVCYADVIWTKNKHGDAKYPLVPGHEIVGIVKSVGSNVQRFKVGDHVGVGTYVNSCRQCEYCEDGQEVICTRGSTFTFNAIDVDGTITKGGYSNYIVVHERYCYKIPGNYPLASAAPLLCAGITVYSPMIRHKMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKEEALSVLGADKFVISSENEEMEALSKSLDFIIDAASGDHPFDPYMSTLKIGGIMVLVGFPSQVKFSPASLNLGLRTISGSVTGGTKLTQEMLDFCAAHGIYPNIEVVPIQYSNEAIERVIKNDVKYRFVIDIQGSLK 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66687275 66691941 + Sed0018975.1 Sed01g3758 703062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3758 352 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 182 209 IPR029752 -
Sed01g3758 352 Pfam Zinc-binding dehydrogenase 189 311 IPR013149 -
Sed01g3758 352 FunFam Putative cinnamyl alcohol dehydrogenase 6 318 347 - -
Sed01g3758 352 Pfam Alcohol dehydrogenase GroES-like domain 30 148 IPR013154 -
Sed01g3758 352 Gene3D - 10 347 - -
Sed01g3758 352 CDD CAD1 9 346 IPR047109 GO:0016616(InterPro)
Sed01g3758 352 FunFam Cinnamyl alcohol dehydrogenase 162 317 - -
Sed01g3758 352 SMART PKS_ER_names_mod 11 345 IPR020843 GO:0016491(InterPro)
Sed01g3758 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 152 315 IPR036291 -
Sed01g3758 352 SUPERFAMILY GroES-like 14 180 IPR011032 -
Sed01g3758 352 Gene3D - 162 317 - -
Sed01g3758 352 PANTHER ALDEHYDE REDUCTASE 6 348 IPR047109 GO:0016616(InterPro)|GO:0016616(PANTHER)
Sed01g3758 352 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 65 79 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3758 Sed-Chr1:66687275 Sed05g0638 Sed-Chr5:4650183 5.20E-149 dispersed
Sed01g3758 Sed-Chr1:66687275 Sed01g3759 Sed-Chr1:66687275 1.20E-182 tandem
Sed01g3758 Sed-Chr1:66687275 Sed05g0637 Sed-Chr5:4650183 3.80E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3758 K00083 - csv:101211438 649.047