Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3764 ATGAATTTTGGGCTAAATCGACTCCAGAATCACCATCTCGATCCAAGAAATAGGCTCGATTTGGAACCAGTGGAGGAATCTACTGGTTCCGCCGCCGTGGAGTTTGAACTCCACGGCGGTAGTGGCAACGGTGGTGGAGGAAGAGGAGGAGAAGTTGAGAGGGAGCACATGTTCGACAAAGTGGTGACGCCGAGCGACGTCGGGAAATTGAACCGGCTAGTGATTCCAAAGCAACACGCGGAGAGATTTTTCCCATTAGATTCGTCGACCAACGAGAAGGGTTTGCTCTTAAACTTCGAAGATCGAACCGGGAAATCATGGCGGTTTCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACGAAAGGCTGGAGTCGATTTGTCAAAGAGAAGCGTCTCGACGCTGGCGATATCGTCTCGTTTCAACGCGGAGTTGGCGAAAACGGAAGAGATCACCTTTACATTGACTGGCGCCGTCGCCTTGAGCTTCCCATCGACCATCACCACCCACCCGGGATCCAACCGAGCATCGTCATGCCCACCGGTACGACCCCGTGGGGTTCACTAGTGTGGCGGCCACTCACTACAGCAGCTGGATACCACCATCATCCAGCTACCCTAGCTCCGCGGGACCACACACACTTGTCGCGAACAAATAACAACAACAACAATAACAACAACTGGAGGAGTAGAGTGTATTGTCCTTATGAATCATCATCATCATCAGAAATTATGTATTTGAGAAGAGAGGAAAGAAGGGTAGCCCCAAGATTAGGGGATGTTAATTTGGAGGGGAAAGATCAGATGCAACAGGAGTATTTTAGCAATGGTGGAGCTGGAGTTGGTGGTTCAATGGTGGTCCAAGGAAATACTTATGAAGAATTAAAAACAACAGCAAATTATATCATAAATGAAGATCAAGACACACCAGTAAAGAGATCAAGATTGAGGCTTTTTGGTGTAAACATGGAGATGAATTGTCCAAATATTTCATCTTCTGATGAATGTGACTTATTATTGCCTTCTCCTTCAACTCATCAATCATGA 1053 47.39 MNFGLNRLQNHHLDPRNRLDLEPVEESTGSAAVEFELHGGSGNGGGGRGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNEKGLLLNFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGENGRDHLYIDWRRRLELPIDHHHPPGIQPSIVMPTGTTPWGSLVWRPLTTAAGYHHHPATLAPRDHTHLSRTNNNNNNNNNWRSRVYCPYESSSSSEIMYLRREERRVAPRLGDVNLEGKDQMQQEYFSNGGAGVGGSMVVQGNTYEELKTTANYIINEDQDTPVKRSRLRLFGVNMEMNCPNISSSDECDLLLPSPSTHQS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66773003 66774507 - Sed0008798.1 Sed01g3764 703068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3764 350 CDD B3_DNA 56 157 IPR003340 GO:0003677(InterPro)
Sed01g3764 350 Gene3D - 52 172 IPR015300 -
Sed01g3764 350 MobiDBLite consensus disorder prediction 214 230 - -
Sed01g3764 350 FunFam B3 domain-containing protein 51 172 - -
Sed01g3764 350 SUPERFAMILY DNA-binding pseudobarrel domain 55 166 IPR015300 -
Sed01g3764 350 Pfam B3 DNA binding domain 58 161 IPR003340 GO:0003677(InterPro)
Sed01g3764 350 ProSiteProfiles B3 DNA-binding domain profile. 58 161 IPR003340 GO:0003677(InterPro)
Sed01g3764 350 MobiDBLite consensus disorder prediction 209 230 - -
Sed01g3764 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 325 IPR044800 GO:0003700(InterPro)
Sed01g3764 350 SMART B3_2 58 163 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3764 Sed-Chr1:66773003 Sed13g0860 Sed-Chr13:6369344 6.10E-57 dispersed
Sed01g3764 Sed-Chr1:66773003 Sed05g0642 Sed-Chr5:4701270 8.40E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37397 PF02362 B3 7.50E-29 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3764 K09287 - csv:101211271 407.912