Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3770 ATGCCTCCCTTCCTAACAGGCCTCAGCCGAATGGAAGTGCAAAATCATGATCATGGTCACATAATTGAAGTATGTGGAGAGGTGCAAGCAGTAGGGCCTAGCATTGTGGGGAGTAAAATTTGTGGGGTGGCACCGTCTTGTGGATTTAAAGATGCAAAAAATAGTTCGAAAGATGCAGAGGAGCGATCTGCATCCATGCGGAAGCTTTTCATCGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTTGGAGGCATTAAAGCAAACAGTCTTGCAATATTGACCGATGCTGCTCATTTATTGTCAGACGTTGCTGCATTTGCCATTTCCTTGTTCTCACTCTGGGCCTCTGGCTGGGAGGCAACTCCGCGCCAGTCGTATGGCTTTTTCCGGATTGAAATACTTGGTGCTCTTGTTTCCATTCAGATGATTTGGCTTCTTGCTGGAATTCTTGTTTACGAAGCCATTGTTCGACTTATCAATGGTCCAGGAGAAGTTAAGGGGTTGCTCATGTTTGCTGTTTCTGCGTTCGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTCGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGATCATGACCATGGTCATGGCGGCCACGAACATGAACATGATCACCACCATGGGTTAAGTGTTACCACTCACCACCACCACCACCATGAAGAAGAAGAGGGAGCTGCCAGAAGTGTTGTCAAGCACCACCATGAAGAAAAGGAGGGAGCTGCCAGAAGTGGTGTTAAGCACCACCATGATCATGCTCACGAGGAATCCAGAACTACACCCTTACTTGAAGGTCGCTGCGACGAAGAAAATAATTCACAGAAGGTTACCAAGACAGAGAAAAAGCAACGAAACATAAACCTACAGGGGGCTTACCTTCACGTACTCGGAGATTCCATCCAAAGCATTGGGGTTATGATTGGTGGGGCAGTCATATGGTATAAACCCGAATACATGATTATCGATCTGATATGCACCCTCATTTTCTCTATAATTGTGCTCTACACAACAATTCAAATGCTCCGGAACATCCTCGAGGTTCTGATGGAGAGCACGCCTCGAGAGATCGATGCGACAAAGCTGGAGAAGGGCCTATGTGAGATGGACGAGGTAGTTGCAATCCATGAACTGCACATCTGGGCGATAACTGTCGGAAAGGTTCTGTTGGCATGCCATGTGATAATCAAGCCAGAGGCAAATGCGGACATGGTGTTGGACAAGGTTATAGAGTACATCAGAAGAGAGTACAACATCAGCCATGTCACTATTCAGATAGAGCGCCAGTAA 1338 46.71 MPPFLTGLSRMEVQNHDHGHIIEVCGEVQAVGPSIVGSKICGVAPSCGFKDAKNSSKDAEERSASMRKLFIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGHAHSHGHSHGHGDHDHGHGGHEHEHDHHHGLSVTTHHHHHHEEEEGAARSVVKHHHEEKEGAARSGVKHHHDHAHEESRTTPLLEGRCDEENNSQKVTKTEKKQRNINLQGAYLHVLGDSIQSIGVMIGGAVIWYKPEYMIIDLICTLIFSIIVLYTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66855255 66859038 - Sed0025819.1 Sed01g3770 703074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3770 445 SUPERFAMILY Cation efflux protein transmembrane domain-like 63 367 IPR027469 -
Sed01g3770 445 MobiDBLite consensus disorder prediction 204 298 - -
Sed01g3770 445 Gene3D Cation efflux protein transmembrane domain 65 365 IPR027469 -
Sed01g3770 445 Pfam Cation efflux family 69 366 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3770 445 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 372 443 IPR036837 -
Sed01g3770 445 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 37 444 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Sed01g3770 445 NCBIfam cation diffusion facilitator family transporter 66 445 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3770 445 MobiDBLite consensus disorder prediction 196 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1126 Sed-Chr1:8399922 Sed01g3770 Sed-Chr1:66855255 1.40E-75 dispersed
Sed01g3770 Sed-Chr1:66855255 Sed01g3772 Sed-Chr1:66855255 2.00E-198 dispersed
Sed01g3770 Sed-Chr1:66855255 Sed01g3771 Sed-Chr1:66855255 8.50E-205 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3770 K14689 - csv:101213602 639.032