Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3770 | ATGCCTCCCTTCCTAACAGGCCTCAGCCGAATGGAAGTGCAAAATCATGATCATGGTCACATAATTGAAGTATGTGGAGAGGTGCAAGCAGTAGGGCCTAGCATTGTGGGGAGTAAAATTTGTGGGGTGGCACCGTCTTGTGGATTTAAAGATGCAAAAAATAGTTCGAAAGATGCAGAGGAGCGATCTGCATCCATGCGGAAGCTTTTCATCGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTTGGAGGCATTAAAGCAAACAGTCTTGCAATATTGACCGATGCTGCTCATTTATTGTCAGACGTTGCTGCATTTGCCATTTCCTTGTTCTCACTCTGGGCCTCTGGCTGGGAGGCAACTCCGCGCCAGTCGTATGGCTTTTTCCGGATTGAAATACTTGGTGCTCTTGTTTCCATTCAGATGATTTGGCTTCTTGCTGGAATTCTTGTTTACGAAGCCATTGTTCGACTTATCAATGGTCCAGGAGAAGTTAAGGGGTTGCTCATGTTTGCTGTTTCTGCGTTCGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTCGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGATCATGACCATGGTCATGGCGGCCACGAACATGAACATGATCACCACCATGGGTTAAGTGTTACCACTCACCACCACCACCACCATGAAGAAGAAGAGGGAGCTGCCAGAAGTGTTGTCAAGCACCACCATGAAGAAAAGGAGGGAGCTGCCAGAAGTGGTGTTAAGCACCACCATGATCATGCTCACGAGGAATCCAGAACTACACCCTTACTTGAAGGTCGCTGCGACGAAGAAAATAATTCACAGAAGGTTACCAAGACAGAGAAAAAGCAACGAAACATAAACCTACAGGGGGCTTACCTTCACGTACTCGGAGATTCCATCCAAAGCATTGGGGTTATGATTGGTGGGGCAGTCATATGGTATAAACCCGAATACATGATTATCGATCTGATATGCACCCTCATTTTCTCTATAATTGTGCTCTACACAACAATTCAAATGCTCCGGAACATCCTCGAGGTTCTGATGGAGAGCACGCCTCGAGAGATCGATGCGACAAAGCTGGAGAAGGGCCTATGTGAGATGGACGAGGTAGTTGCAATCCATGAACTGCACATCTGGGCGATAACTGTCGGAAAGGTTCTGTTGGCATGCCATGTGATAATCAAGCCAGAGGCAAATGCGGACATGGTGTTGGACAAGGTTATAGAGTACATCAGAAGAGAGTACAACATCAGCCATGTCACTATTCAGATAGAGCGCCAGTAA | 1338 | 46.71 | MPPFLTGLSRMEVQNHDHGHIIEVCGEVQAVGPSIVGSKICGVAPSCGFKDAKNSSKDAEERSASMRKLFIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGHAHSHGHSHGHGDHDHGHGGHEHEHDHHHGLSVTTHHHHHHEEEEGAARSVVKHHHEEKEGAARSGVKHHHDHAHEESRTTPLLEGRCDEENNSQKVTKTEKKQRNINLQGAYLHVLGDSIQSIGVMIGGAVIWYKPEYMIIDLICTLIFSIIVLYTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 66855255 | 66859038 | - | Sed0025819.1 | Sed01g3770 | 703074 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3770 | 445 | SUPERFAMILY | Cation efflux protein transmembrane domain-like | 63 | 367 | IPR027469 | - | |
Sed01g3770 | 445 | MobiDBLite | consensus disorder prediction | 204 | 298 | - | - | |
Sed01g3770 | 445 | Gene3D | Cation efflux protein transmembrane domain | 65 | 365 | IPR027469 | - | |
Sed01g3770 | 445 | Pfam | Cation efflux family | 69 | 366 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3770 | 445 | SUPERFAMILY | Cation efflux protein cytoplasmic domain-like | 372 | 443 | IPR036837 | - | |
Sed01g3770 | 445 | PANTHER | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER | 37 | 444 | IPR050681 | GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER) | |
Sed01g3770 | 445 | NCBIfam | cation diffusion facilitator family transporter | 66 | 445 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g3770 | 445 | MobiDBLite | consensus disorder prediction | 196 | 298 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1126 | Sed-Chr1:8399922 | Sed01g3770 | Sed-Chr1:66855255 | 1.40E-75 | dispersed | |
Sed01g3770 | Sed-Chr1:66855255 | Sed01g3772 | Sed-Chr1:66855255 | 2.00E-198 | dispersed | |
Sed01g3770 | Sed-Chr1:66855255 | Sed01g3771 | Sed-Chr1:66855255 | 8.50E-205 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3770 | K14689 | - | csv:101213602 | 639.032 |