Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3773 ATGGAAGTGCAAAATCATGATCATGGTCACATAATTGAAGTATGTGGAGAGGTGCAAGCAGTAGGGCCTAGCATTGTGGGGAGTAAAATTTGTGGGGTGGCACCGTCTTGTGGATTTAAAGATGCAAAAAATAGTTCGAAAGATGCAGAGGAGCGATCTGCATCCATGCGGAAGCTTTTCATCGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTTGGAGGCATTAAAGCAAACAGTCTTGCAATATTGACCGATGCTGCTCATTTATTGTCAGACGTTGCTGCATTTGCCATTTCCTTGTTCTCACTCTGGGCCTCTGGCTGGGAGGCAACTCCGCGCCAGTCGTATGGCTTTTTCCGGATTGAAATACTTGGTGCTCTTGTTTCCATTCAGATGATTTGGCTTCTTGCTGGAATTCTTGTTTACGAAGCCATTGTTCGACTTATCAATGGTCCAGGAGAAGTTAAGGGGTTGCTCATGTTTGCTGTTTCTGCGTTCGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTCGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGATCATGACCATGGTCATGGCGGCCACGAACATGAACATGATCACCACCATGGGTTAAGTGTTACCACTCACCACCACCACCACCATGAAGAAGAAGAGGGAGCTGCCAGAAGTGTTGTCAAGCACCACCATGAAGAAAAGGAGGGAGCTGCCAGAAGTGGTGTTAAGCACCACCATGATCATGCTCACGAGGAATCCAGAACTACACCCTTACTTGAAGGTCGCTGCGACGAAGAAAATAATTCACAGAAGGTTACCAAGACAGAGAAAAAGCAACGAAACATAAACCTACAGGGGGCTTACCTTCACGTACTCGGAGATTCCATCCAAAGCATTGGGGTTATGATTGGTGGGGCAGTCATATGGTATAAACCCGAATACATGATTATCGATCTGATATGCACCCTCATTTTCTCTATAATTGTGCTCTACACAACAATTCAAATGCTCCGGAACATCCTCGAGGTTCTGATGGAGAGCACGCCTCGAGAGATCGATGCGACAAAGCTGGAGAAGGGCCTATGTGAGATGGACGAGGTAGTTGCAATCCATGAACTGCACATCTGGGCGATAACTGTCGGAAAGGTTCTGTTGGCATGCCATGTGATAATCAAGCCAGAGGCAAATGCGGACATGGTGTTGGACAAGGTTATAGAGTACATCAGAAGAGAGTACAACATCAGCCATGTCACTATTCAGATAGAGCGCCAGTAA 1308 46.41 MEVQNHDHGHIIEVCGEVQAVGPSIVGSKICGVAPSCGFKDAKNSSKDAEERSASMRKLFIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGHAHSHGHSHGHGDHDHGHGGHEHEHDHHHGLSVTTHHHHHHEEEEGAARSVVKHHHEEKEGAARSGVKHHHDHAHEESRTTPLLEGRCDEENNSQKVTKTEKKQRNINLQGAYLHVLGDSIQSIGVMIGGAVIWYKPEYMIIDLICTLIFSIIVLYTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66855255 66859493 - Sed0025819.4 Sed01g3773 703077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3773 435 Gene3D Cation efflux protein transmembrane domain 55 355 IPR027469 -
Sed01g3773 435 NCBIfam cation diffusion facilitator family transporter 56 435 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3773 435 MobiDBLite consensus disorder prediction 194 288 - -
Sed01g3773 435 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 362 433 IPR036837 -
Sed01g3773 435 SUPERFAMILY Cation efflux protein transmembrane domain-like 53 357 IPR027469 -
Sed01g3773 435 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 27 434 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Sed01g3773 435 MobiDBLite consensus disorder prediction 186 288 - -
Sed01g3773 435 Pfam Cation efflux family 59 356 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3771 Sed-Chr1:66855255 Sed01g3773 Sed-Chr1:66855255 2.00E-198 dispersed
Sed01g3773 Sed-Chr1:66855255 Sed13g1429 Sed-Chr13:19546269 2.50E-76 dispersed
Sed01g3772 Sed-Chr1:66855255 Sed01g3773 Sed-Chr1:66855255 2.00E-198 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3773 K14689 - csv:101213602 639.032