Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3791 ATGGATTGCGGTGCGGATTTGGTGTCTGGGAAGTCTATGGCGGATGATACGATTGAAGAGAAGGACCCAACTGGACGGTATATACGGTATGATGAGATTTTGGGTAAAGGGGCATTCAAGACAGTTTACAAAGCTTTCGATGAAGTTGGTGGAATCGAAGTTGCTTGGGCCCAAGTGGAGATTGAAGATGTTTTGCAGTCACCAGAACAACTTGAAAGATTATATTCTGAGGTTAATTTGCTGAAGTCGCTGAAACATGAGAATATCATCAAGTTCTATAGCTACTGGGTTGATGATAAGAAAAAGACTATCAACATGATTACTGAATTGTTCACATCTGGGAGTTTGAGACAATATCGAAAGAAGCACAGGAAAGTTGACATGAAAGCCTTCAAGAACTGGGCAAGGCAGATACTGCGGGGTTTAACGTATTTACATGGTCACAATCCTCCAATTATTCACAGGGATTTGAAATGTGATAACATATTTGTCAATGGAAATACTGGAGAAATTAAAATTGGAGATCTCGGATTAGCGATTGTCATGCAGCAGCCTACTGCTCGAAGTGTTATTGGCACTCCAGAGTTCATGGCTCCAGAGCTCTATGATGAGGACTACAATGAACTCGTTGACATCTATTCTTTTGGCTTGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAATGCAAAAATCCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCCCTTGAAAAAGTGTCCGACCCTCAAATTAAGCAGTTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGACTGCCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGCAACTGAAAGTCCCAAGGGTCGTAGTTCTGAACTTTCAAGGTTACTGAATCCGCAGGTCAAGTCAATCGATCCTCCGCTGCTGGCTACGAATCCAATGGACATAGACCATAACTGCAGCAAACCTTCGGGCTCTGTGGACTCATCTGTCAAAAGTAGTAATGGAATTCCTCACTTTTCAACTGTCGAACTTCGGAGGCTCACTCAGAACAATGAACTGACACTGAAAGGGGACATGACTGATCATAATACAGTTTCCTTCGATTTGCACATCGCCGAACTATCTGGTAAATCTAAGAATCATATCCATTTTGCCTTCTATCTCGATTCTGACACTGCTTTGGTTATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCTACTGTCATAGCTAAATTGATTGATGAATTAATTACCAAGTTTGTTCCCACCTGGAAACCCTGTACAAATTATCATGGACAAAATACTGCACATAATTCTGAAACTGAAGAGGATAAGTCCTTTATTATTCCTCCTCTCTTCTCTGATCTGGTACTGTCATGCCCCTTGGTGGCTGCTGCAATGAAAACTCCGATACATTTGGCCGAGGTAGGAGATAAAGAAAACTGCGTCGAGGTCCGAGATCAAGAAATCCAGCCAACAATTATCTCGTGTGCATCTTTCGACTACAATCACTCAACTATCTCAGATTACAGCATGGGAAAAGGATCAGAGTTTGGTGACTTCAGCCACCCTGAATGTTATAAGTCTTTTACCAGCAATGGAACAGCTGATTTTAACTCTGTTGGATCTCTTTCGATGATGATGGATTACTCTAAACCCTCAGTTATCTCGACCTGCTCGGGAATGTCCAAAGACTTGAGCCTGTCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGATCACCATGATGAACTCAAGATGGAGATTGATGATATTGACTTGCAGTACCACCAGTGCCTTTGCAAACTGTTTAGAATGAGAGAGGAATTAATAGAAACAGCCAAGAAGAAGTGGATGTCAAAGAAGAAAGCTTCTGCTATTTGA 1914 41.48 MDCGADLVSGKSMADDTIEEKDPTGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWAQVEIEDVLQSPEQLERLYSEVNLLKSLKHENIIKFYSYWVDDKKKTINMITELFTSGSLRQYRKKHRKVDMKAFKNWARQILRGLTYLHGHNPPIIHRDLKCDNIFVNGNTGEIKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGLCMLEIVTCEYPYNECKNPAQIFKKVTSGIKPASLEKVSDPQIKQFIEKCLVPASMRLPASELLKDPFLATESPKGRSSELSRLLNPQVKSIDPPLLATNPMDIDHNCSKPSGSVDSSVKSSNGIPHFSTVELRRLTQNNELTLKGDMTDHNTVSFDLHIAELSGKSKNHIHFAFYLDSDTALVIALEMVEQLELSNEDATVIAKLIDELITKFVPTWKPCTNYHGQNTAHNSETEEDKSFIIPPLFSDLVLSCPLVAAAMKTPIHLAEVGDKENCVEVRDQEIQPTIISCASFDYNHSTISDYSMGKGSEFGDFSHPECYKSFTSNGTADFNSVGSLSMMMDYSKPSVISTCSGMSKDLSLSSFSTLSLEERDHHDELKMEIDDIDLQYHQCLCKLFRMREELIETAKKKWMSKKKASAI 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67090300 67094723 - Sed0025013.1 Sed01g3791 703095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3791 637 ProSiteProfiles Protein kinase domain profile. 28 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3791 637 Gene3D Transferase(Phosphotransferase) domain 1 111 291 - -
Sed01g3791 637 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 381 427 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed01g3791 637 CDD STKc_WNK 26 285 - -
Sed01g3791 637 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Sed01g3791 637 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 17 454 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed01g3791 637 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3791 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3791 637 FunFam probable serine/threonine-protein kinase WNK9 111 290 - -
Sed01g3791 637 SMART serkin_6 28 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3791 637 Gene3D - 368 460 - -
Sed01g3791 637 Gene3D Phosphorylase Kinase; domain 1 13 109 - -
Sed01g3791 637 SUPERFAMILY Protein kinase-like (PK-like) 21 285 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3791 Sed-Chr1:67090300 Sed05g0674 Sed-Chr5:5034761 2.90E-174 dispersed
Sed01g3791 Sed-Chr1:67090300 Sed01g3792 Sed-Chr1:67090300 0.00E+00 tandem
Sed01g3791 Sed-Chr1:67090300 Sed05g0673 Sed-Chr5:5034761 8.30E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78740 PF00069 Pkinase 4.50E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3791 K08867 - csv:101207748 962.214