Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3792 ATGATACGATTGAAGAGAAGGACCCAACTGGACGGTATATACGGTTACAAAGCTTTCGATGAAGTTGGTGGAATCGAAGTTGCTTGGGCCCAAGTGGAGATTGAAGATGTTTTGCAGTCACCAGAACAACTTGAAAGATTATATTCTGAGGTTAATTTGCTGAAGTCGCTGAAACATGAGAATATCATCAAGTTCTATAGCTACTGGGTTGATGATAAGAAAAAGACTATCAACATGATTACTGAATTGTTCACATCTGGGAGTTTGAGACAATATCGAAAGAAGCACAGGAAAGTTGACATGAAAGCCTTCAAGAACTGGGCAAGGCAGATACTGCGGGGTTTAACGTATTTACATGGTCACAATCCTCCAATTATTCACAGGGATTTGAAATGTGATAACATATTTGTCAATGGAAATACTGGAGAAATTAAAATTGGAGATCTCGGATTAGCGATTGTCATGCAGCAGCCTACTGCTCGAAGTGTTATTGGCACTCCAGAGTTCATGGCTCCAGAGCTCTATGATGAGGACTACAATGAACTCGTTGACATCTATTCTTTTGGCTTGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAATGCAAAAATCCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCCCTTGAAAAAGTGTCCGACCCTCAAATTAAGCAGTTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGACTGCCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGCAACTGAAAGTCCCAAGGGTCGTAGTTCTGAACTTTCAAGGTTACTGAATCCGCAGGTCAAGTCAATCGATCCTCCGCTGCTGGCTACGAATCCAATGGACATAGACCATAACTGCAGCAAACCTTCGGGCTCTGTGGACTCATCTGTCAAAAGTAGTAATGGAATTCCTCACTTTTCAACTGTCGAACTTCGGAGGCTCACTCAGAACAATGAACTGACACTGAAAGGGGACATGACTGATCATAATACAGTTTCCTTCGATTTGCACATCGCCGAACTATCTGGTAAATCTAAGAATCATATCCATTTTGCCTTCTATCTCGATTCTGACACTGCTTTGGTTATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCTACTGTCATAGCTAAATTGATTGATGAATTAATTACCAAGTTTGTTCCCACCTGGAAACCCTGTACAAATTATCATGGACAAAATACTGCACATAATTCTGAAACTGAAGAGGATAAGTCCTTTATTATTCCTCCTCTCTTCTCTGATCTGGTACTGTCATGCCCCTTGGTGGCTGCTGCAATGAAAACTCCGATACATTTGGCCGAGGTAGGAGATAAAGAAAACTGCGTCGAGGTCCGAGATCAAGAAATCCAGCCAACAATTATCTCGTGTGCATCTTTCGACTACAATCACTCAACTATCTCAGATTACAGCATGGGAAAAGGATCAGAGTTTGGTGACTTCAGCCACCCTGAATGTTATAAGTCTTTTACCAGCAATGGAACAGCTGATTTTAACTCTGTTGGATCTCTTTCGATGATGATGGATTACTCTAAACCCTCAGTTATCTCGACCTGCTCGGGAATGTCCAAAGACTTGAGCCTGTCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGATCACCATGATGAACTCAAGATGGAGATTGATGATATTGACTTGCAGTACCACCAGTGCCTTTGCAAACTGTTTAGAATGAGAGAGGAATTAATAGAAACAGCCAAGAAGAAGTGGATGTCAAAGAAGAAAGCTTCTGCTATTTGA 1833 41.19 MIRLKRRTQLDGIYGYKAFDEVGGIEVAWAQVEIEDVLQSPEQLERLYSEVNLLKSLKHENIIKFYSYWVDDKKKTINMITELFTSGSLRQYRKKHRKVDMKAFKNWARQILRGLTYLHGHNPPIIHRDLKCDNIFVNGNTGEIKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGLCMLEIVTCEYPYNECKNPAQIFKKVTSGIKPASLEKVSDPQIKQFIEKCLVPASMRLPASELLKDPFLATESPKGRSSELSRLLNPQVKSIDPPLLATNPMDIDHNCSKPSGSVDSSVKSSNGIPHFSTVELRRLTQNNELTLKGDMTDHNTVSFDLHIAELSGKSKNHIHFAFYLDSDTALVIALEMVEQLELSNEDATVIAKLIDELITKFVPTWKPCTNYHGQNTAHNSETEEDKSFIIPPLFSDLVLSCPLVAAAMKTPIHLAEVGDKENCVEVRDQEIQPTIISCASFDYNHSTISDYSMGKGSEFGDFSHPECYKSFTSNGTADFNSVGSLSMMMDYSKPSVISTCSGMSKDLSLSSFSTLSLEERDHHDELKMEIDDIDLQYHQCLCKLFRMREELIETAKKKWMSKKKASAI 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67090300 67094723 - Sed0025013.2 Sed01g3792 703096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3792 610 FunFam probable serine/threonine-protein kinase WNK9 84 263 - -
Sed01g3792 610 SUPERFAMILY Protein kinase-like (PK-like) 16 258 IPR011009 -
Sed01g3792 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3792 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 16 427 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed01g3792 610 CDD STKc_WNK 16 258 - -
Sed01g3792 610 Gene3D Phosphorylase Kinase; domain 1 12 82 - -
Sed01g3792 610 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 354 400 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed01g3792 610 Gene3D Transferase(Phosphotransferase) domain 1 84 264 - -
Sed01g3792 610 SMART serkin_6 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3792 610 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3792 610 FunFam Probable serine/threonine-protein kinase WNK1 12 82 - -
Sed01g3792 610 Gene3D - 341 433 - -
Sed01g3792 610 Pfam Protein kinase domain 26 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3792 Sed-Chr1:67090300 Sed05g0673 Sed-Chr5:5034761 8.00E-254 dispersed
Sed01g3791 Sed-Chr1:67090300 Sed01g3792 Sed-Chr1:67090300 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78741 PF00069 Pkinase 2.80E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3792 K08867 - csv:101207748 902.894