Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3807 | ATGGCTTTTCATGGAGGAGATTCGTGTAAGAAATCTTGTGTTTCTGCTCGAGGTTCTGGAAGAGATGATCTGTATATGGAGCTATGGAGGTCTTGTGCAGGTCCATTGGTTGATGTGCCTCGCGTTGATGAGAGAGTCTTCTATTTTCCTCAGGGACATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTATTGAATCTTTCCTCGAAGATTCTATGCCGTGTAATTCATATCGAGCCGCTGGCAGATCATGACTCGGACGAGGTTTATGCGCAAATGGCTTTAATGCCAGAATCAAATCAAAATGAGCCTGAAGGTCTAGATCCATGCCCTCCTGAACCAGCTAGACCAGTTGTTCATTCATTTTGTAAGGTTTTAACCGCATCCGATACCAGCACTCATGGTGGGTTTTCTGTCCTCAGAAAACATGCTAATGAATGCCTACCACCTTTGGACATGACTCAGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCACGGATATGAGTGGCGATTCAAACATATTTTCAGAGGTCAACCACGAAGGCATCTGCTAACGACTGGGTGGAGTACATTTGTTACTTCTAAAAGATTATCTGCAGGAGATTCCTTTGTATTCTTGAGGGGAGATAATGGACATTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCATCATCTGTTATATCAAGTCAGAGCATGCACTTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACACGTTTTGTAGTCTATTATAAACCTAGGACATGTCAGTTCATTATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAAATTTTCTCTTGGCATGAGGTTCAACATGATTTTTGAGGGAGAGGATTCTCCAAAGAGAAGGTTTTCAGGAACTATAATTGGAACTGGAGATATCTCACCTCATTGGGCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAGCAAACATCTATTCCAAGACCTGATAGAGTTTCGCCTTGGGATGTAGAACCACTCACATCTTCAGCAGTCACAAGTCTACCTCAACCCGTTTCAAAGAACAAAAGGCCTCGACAGGCAACTGAAACTCCTGTTCTTGATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGGACAGTCTCATGATGGTAAACAATGCAGTAATGCAGCTGAAAGCAGAAAAGGGGAAAATAATGAATTGTGTCGTAATAGAGAGACAGATACTATCAGCAACAGCACATGTGTATCAAGAACACAGACTGACGGGACCTGGCTATCTTTTACCCAATCCAATAGCTACAAACACCAAGCAAATGAAAATGGTTGGTCTTTACTGTCAGGACCTTCAAAGTTAAGTGATGATCAAATACTTGATCCAACTGAAAATGGGAGGAAAGCCGAAACAGTAGTTGGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTATGTCTAGCGATACAGATGGGCGCATCAGTACCTTGTCAGTGTCTCAGTCCGATCCAAAATCTGACAACTTGGATGTCTCCATCAAAAGAAAGTCGGAACCATTACAAGCATCTCTGAAGGAAACACAAAGTAGCTCAACTAACACCAGAAGCCGCACCAAGGTTCAAATGCATGGAATGGCCGTGGGTAGGGCTGTGGACTTAACCATTTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAATTGTCGGCTCGAGATACGTGGGAGATCGTATATACAGACGACGAAGGGGATATGATGCTTGTTGGAGATGATCCATGGGAAGAGTTTTGTAACATGGTGAGAAGAATTTTTATACGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCCGACATCCATCGAAGTCGAAGGGGCAGTAGAAATCCCCGACTCCCCTGCAATTTGA | 2040 | 43.48 | MAFHGGDSCKKSCVSARGSGRDDLYMELWRSCAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLLNLSSKILCRVIHIEPLADHDSDEVYAQMALMPESNQNEPEGLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGHLRVGVRRRAQQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSLGMRFNMIFEGEDSPKRRFSGTIIGTGDISPHWANSSWRSLRVQWDEQTSIPRPDRVSPWDVEPLTSSAVTSLPQPVSKNKRPRQATETPVLDGADLTKSAHWDSGLGQSHDGKQCSNAAESRKGENNELCRNRETDTISNSTCVSRTQTDGTWLSFTQSNSYKHQANENGWSLLSGPSKLSDDQILDPTENGRKAETVVGCRLFGIDLNHLAKLPAEKASSQPSSMSSDTDGRISTLSVSQSDPKSDNLDVSIKRKSEPLQASLKETQSSSTNTRSRTKVQMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLSARDTWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFIRSREQVKKMSSGSKQPTSIEVEGAVEIPDSPAI | 679 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 67230083 | 67234956 | + | Sed0019236.1 | Sed01g3807 | 703111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3807 | 679 | MobiDBLite | consensus disorder prediction | 652 | 679 | - | - | |
Sed01g3807 | 679 | Pfam | Auxin response factor | 255 | 333 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Sed01g3807 | 679 | MobiDBLite | consensus disorder prediction | 555 | 572 | - | - | |
Sed01g3807 | 679 | FunFam | Auxin response factor | 290 | 361 | - | - | |
Sed01g3807 | 679 | FunFam | Auxin response factor | 563 | 656 | - | - | |
Sed01g3807 | 679 | MobiDBLite | consensus disorder prediction | 359 | 426 | - | - | |
Sed01g3807 | 679 | Gene3D | - | 563 | 656 | - | - | |
Sed01g3807 | 679 | MobiDBLite | consensus disorder prediction | 511 | 540 | - | - | |
Sed01g3807 | 679 | CDD | B3_DNA | 127 | 229 | IPR003340 | GO:0003677(InterPro) | |
Sed01g3807 | 679 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 258 | IPR015300 | - | |
Sed01g3807 | 679 | Pfam | B3 DNA binding domain | 129 | 230 | IPR003340 | GO:0003677(InterPro) | |
Sed01g3807 | 679 | MobiDBLite | consensus disorder prediction | 359 | 377 | - | - | |
Sed01g3807 | 679 | Gene3D | - | 290 | 363 | - | - | |
Sed01g3807 | 679 | ProSiteProfiles | PB1 domain profile. | 568 | 649 | IPR053793 | - | |
Sed01g3807 | 679 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 23 | 657 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Sed01g3807 | 679 | Gene3D | - | 126 | 231 | IPR015300 | - | |
Sed01g3807 | 679 | SUPERFAMILY | CAD & PB1 domains | 562 | 644 | - | - | |
Sed01g3807 | 679 | FunFam | Auxin response factor | 127 | 231 | - | - | |
Sed01g3807 | 679 | MobiDBLite | consensus disorder prediction | 402 | 416 | - | - | |
Sed01g3807 | 679 | MobiDBLite | consensus disorder prediction | 509 | 572 | - | - | |
Sed01g3807 | 679 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Sed01g3807 | 679 | SMART | B3_2 | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Sed01g3807 | 679 | Pfam | AUX/IAA family | 558 | 604 | IPR033389 | - | |
Sed01g3807 | 679 | Pfam | AUX/IAA family | 614 | 646 | IPR033389 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3807 | Sed-Chr1:67230083 | Sed09g0530 | Sed-Chr9:5366658 | 4.80E-191 | dispersed | |
Sed01g3807 | Sed-Chr1:67230083 | Sed13g0775 | Sed-Chr13:5620801 | 1.80E-214 | wgd | |
Sed01g3807 | Sed-Chr1:67230083 | Sed05g0692 | Sed-Chr5:5175632 | 0.00E+00 | wgd | |
Sed01g3807 | Sed-Chr1:67230083 | Sed07g0958 | Sed-Chr7:7006966 | 5.80E-213 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37403 | PF02309 | AUX_IAA | 7.80E-12 | CL0072 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3807 | K14486 | - | csv:101209208 | 1146.34 |