Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3807 ATGGCTTTTCATGGAGGAGATTCGTGTAAGAAATCTTGTGTTTCTGCTCGAGGTTCTGGAAGAGATGATCTGTATATGGAGCTATGGAGGTCTTGTGCAGGTCCATTGGTTGATGTGCCTCGCGTTGATGAGAGAGTCTTCTATTTTCCTCAGGGACATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTATTGAATCTTTCCTCGAAGATTCTATGCCGTGTAATTCATATCGAGCCGCTGGCAGATCATGACTCGGACGAGGTTTATGCGCAAATGGCTTTAATGCCAGAATCAAATCAAAATGAGCCTGAAGGTCTAGATCCATGCCCTCCTGAACCAGCTAGACCAGTTGTTCATTCATTTTGTAAGGTTTTAACCGCATCCGATACCAGCACTCATGGTGGGTTTTCTGTCCTCAGAAAACATGCTAATGAATGCCTACCACCTTTGGACATGACTCAGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCACGGATATGAGTGGCGATTCAAACATATTTTCAGAGGTCAACCACGAAGGCATCTGCTAACGACTGGGTGGAGTACATTTGTTACTTCTAAAAGATTATCTGCAGGAGATTCCTTTGTATTCTTGAGGGGAGATAATGGACATTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCATCATCTGTTATATCAAGTCAGAGCATGCACTTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACACGTTTTGTAGTCTATTATAAACCTAGGACATGTCAGTTCATTATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAAATTTTCTCTTGGCATGAGGTTCAACATGATTTTTGAGGGAGAGGATTCTCCAAAGAGAAGGTTTTCAGGAACTATAATTGGAACTGGAGATATCTCACCTCATTGGGCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAGCAAACATCTATTCCAAGACCTGATAGAGTTTCGCCTTGGGATGTAGAACCACTCACATCTTCAGCAGTCACAAGTCTACCTCAACCCGTTTCAAAGAACAAAAGGCCTCGACAGGCAACTGAAACTCCTGTTCTTGATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGGACAGTCTCATGATGGTAAACAATGCAGTAATGCAGCTGAAAGCAGAAAAGGGGAAAATAATGAATTGTGTCGTAATAGAGAGACAGATACTATCAGCAACAGCACATGTGTATCAAGAACACAGACTGACGGGACCTGGCTATCTTTTACCCAATCCAATAGCTACAAACACCAAGCAAATGAAAATGGTTGGTCTTTACTGTCAGGACCTTCAAAGTTAAGTGATGATCAAATACTTGATCCAACTGAAAATGGGAGGAAAGCCGAAACAGTAGTTGGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTATGTCTAGCGATACAGATGGGCGCATCAGTACCTTGTCAGTGTCTCAGTCCGATCCAAAATCTGACAACTTGGATGTCTCCATCAAAAGAAAGTCGGAACCATTACAAGCATCTCTGAAGGAAACACAAAGTAGCTCAACTAACACCAGAAGCCGCACCAAGGTTCAAATGCATGGAATGGCCGTGGGTAGGGCTGTGGACTTAACCATTTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAATTGTCGGCTCGAGATACGTGGGAGATCGTATATACAGACGACGAAGGGGATATGATGCTTGTTGGAGATGATCCATGGGAAGAGTTTTGTAACATGGTGAGAAGAATTTTTATACGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCCGACATCCATCGAAGTCGAAGGGGCAGTAGAAATCCCCGACTCCCCTGCAATTTGA 2040 43.48 MAFHGGDSCKKSCVSARGSGRDDLYMELWRSCAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLLNLSSKILCRVIHIEPLADHDSDEVYAQMALMPESNQNEPEGLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGHLRVGVRRRAQQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSLGMRFNMIFEGEDSPKRRFSGTIIGTGDISPHWANSSWRSLRVQWDEQTSIPRPDRVSPWDVEPLTSSAVTSLPQPVSKNKRPRQATETPVLDGADLTKSAHWDSGLGQSHDGKQCSNAAESRKGENNELCRNRETDTISNSTCVSRTQTDGTWLSFTQSNSYKHQANENGWSLLSGPSKLSDDQILDPTENGRKAETVVGCRLFGIDLNHLAKLPAEKASSQPSSMSSDTDGRISTLSVSQSDPKSDNLDVSIKRKSEPLQASLKETQSSSTNTRSRTKVQMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLSARDTWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFIRSREQVKKMSSGSKQPTSIEVEGAVEIPDSPAI 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67230083 67234956 + Sed0019236.1 Sed01g3807 703111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3807 679 MobiDBLite consensus disorder prediction 652 679 - -
Sed01g3807 679 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g3807 679 MobiDBLite consensus disorder prediction 555 572 - -
Sed01g3807 679 FunFam Auxin response factor 290 361 - -
Sed01g3807 679 FunFam Auxin response factor 563 656 - -
Sed01g3807 679 MobiDBLite consensus disorder prediction 359 426 - -
Sed01g3807 679 Gene3D - 563 656 - -
Sed01g3807 679 MobiDBLite consensus disorder prediction 511 540 - -
Sed01g3807 679 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Sed01g3807 679 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Sed01g3807 679 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677(InterPro)
Sed01g3807 679 MobiDBLite consensus disorder prediction 359 377 - -
Sed01g3807 679 Gene3D - 290 363 - -
Sed01g3807 679 ProSiteProfiles PB1 domain profile. 568 649 IPR053793 -
Sed01g3807 679 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 657 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g3807 679 Gene3D - 126 231 IPR015300 -
Sed01g3807 679 SUPERFAMILY CAD & PB1 domains 562 644 - -
Sed01g3807 679 FunFam Auxin response factor 127 231 - -
Sed01g3807 679 MobiDBLite consensus disorder prediction 402 416 - -
Sed01g3807 679 MobiDBLite consensus disorder prediction 509 572 - -
Sed01g3807 679 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Sed01g3807 679 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Sed01g3807 679 Pfam AUX/IAA family 558 604 IPR033389 -
Sed01g3807 679 Pfam AUX/IAA family 614 646 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3807 Sed-Chr1:67230083 Sed09g0530 Sed-Chr9:5366658 4.80E-191 dispersed
Sed01g3807 Sed-Chr1:67230083 Sed13g0775 Sed-Chr13:5620801 1.80E-214 wgd
Sed01g3807 Sed-Chr1:67230083 Sed05g0692 Sed-Chr5:5175632 0.00E+00 wgd
Sed01g3807 Sed-Chr1:67230083 Sed07g0958 Sed-Chr7:7006966 5.80E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37403 PF02309 AUX_IAA 7.80E-12 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3807 K14486 - csv:101209208 1146.34