Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3808 ATGGGGTTTCCTCAAACTCCATCCCCTCCTCATCTTTATCCTCAAGCTCTTCAACTTAAGCTTTATCAAGCCTTCATATTTTCAATTCCCATCCTATTTTCCATTATTCTTTTTCTTCTTTTCTACTTGTTTTATCTCAAAAGAAGAGCTTCTTCTCTTTCTTCCTCTTCTTCTTCTCCCCCAATTCTTCCAACTACTTCCAATAGGCTCACTCTCTATGTCACAACTGCTTGTCAAGTGGATTTGAAGGCAGATAATCCCATAGACAAACTTCCCAAGATCCTTTTCAATGAAGAGCTAAGGAACAGAGATTCTCTGTGTTGCGTCTGCTTGGGAGAGTTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGATTGCATGAATCACTGGCTCACCTTCAACTCAACTTGCCCTCTCTGTCGATGCTCGGTTGTTCCGACCCGACATTCTGATCCCGCCGCCGTTGCACTGTCCCCGCCTCGGCCACTGGCTGCCTCAACAGAGCTTCCCTTCACTTCCAACCAGACTGCAGAGATGGTATCATATTCACTCCAACATCCGCAGCTGCAACAACAGGAAGGATCAAGTCAGAGTATATGCTGA 627 44.5 MGFPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSPPILPTTSNRLTLYVTTACQVDLKADNPIDKLPKILFNEELRNRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTFNSTCPLCRCSVVPTRHSDPAAVALSPPRPLAASTELPFTSNQTAEMVSYSLQHPQLQQQEGSSQSIC 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67235679 67238167 - Sed0026122.1 Sed01g3808 703112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3808 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 155 IPR013083 -
Sed01g3808 208 SMART ring_2 107 148 IPR001841 -
Sed01g3808 208 SUPERFAMILY RING/U-box 87 156 - -
Sed01g3808 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 163 - -
Sed01g3808 208 CDD RING-H2_EL5-like 107 149 - -
Sed01g3808 208 Pfam Ring finger domain 106 149 IPR001841 -
Sed01g3808 208 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3808 K19039 - - csv:101207251 282.722
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3808 Sed-Chr1:67235679 Sed11g1767 Sed-Chr11:32669481 2.50E-18 dispersed
Sed01g3808 Sed-Chr1:67235679 Sed05g0693 Sed-Chr5:5181369 1.20E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1752 . . . . . . . . . . Cma01g00880 . Car01g00804 . . Cpe06g00948 . . . . . . . . Cla08g00174 . Cec08g0077 Cco08g0239 . Cmu08g0166 Cre08g0157 . . . . . . . Cme09g00120 . . . . . . . . Sed01g3808 Cmo01g00922 Cmo09g01208 . . . Car09g01077 . Cpe02g00984 Bhi06g00114 Tan10g1839 Cmetu09g1280 . . . . . . . . . . . Lsi08g00177 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010674 2 1 1 0 1 1 1 0 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32