Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3812 ATGGCCAGCTCCTGGAGAGCTCCAGGGTCTCTGATCGTCCTTGCAATCGTGTTCTTCGGATGTCTGTTCGCAATTTCCATTGCGAAAGAGGAAGCATCAAAGTTGGGGACTGTCATTGGGATTGATTTGGGAACAACTTATTCTTGTGTTGGAGTCTACAAGAACGGTCATGTAGAAATTATAGCGAATGACCAAGGAAACCGTATCACCCCTTCTTGGGTGGCTTTCTCTGATACCGAAAGGTTGATCGGTGAGGCTGCGAAGAATCAAGCCGCTGTCAACCCGGAAAGGACAGTCTTTGATGTCAAAAGACTTATCGGTCGAAAGTTTGATGATAAGGAAGTTCAGAAAGACATAAAGCTGTTTCCTTACAAGATTGTGAATAAGGATGGGAAGCCTTACATTCAAGTTAAGATCAAGGATGGTGAGACAAAGGTTTTCAGCCCTGAGGAAATCAGTGCTATGATTCTCACAAAGATGAAGGAAACAGCCGAAGCATTCCTTGGCAAGAAGATCAAGGACGCAGTTGTCACTGTTCCAGCTTATTTCAACGATGCCCAAAGGCAAGCAACTAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCTAGAATCATCAATGAGCCCACTGCGGCTGCTATTGCGTATGGTTTGGATAAGAAAGGCGGCGAGAAGAACATTCTTGTTTTTGATCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGACAATGGTGTTTTTGAGGTTCTTGCCACAAACGGAGACACTCACTTGGGAGGTGAGGACTTTGACCAGAGAATTATGGAATACTTCATCAAATTGATCAAGAAGAAGCACGGAACAGACATCAGCAAGGACAAGAGAGCTCTTGGAAAGCTTAGAAGGGAATGTGAGCGTGCCAAGAGGGCATTGAGTAGCCAGCACCAGGTTCGCGTTGAGATTGAATCCCTCTTCGATGGTACTGACTTCTCTGAGCCTTTGACCAGAGCTCGATTTGAGGAGTTGAACAACGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAGGCCATGGAAGATGCAGGTTTGCAGAAGAACCAAATTGACGAAATCGTGCTTGTTGGTGGTAGCACCAGGATTCCCAAAGTTCAGCAGCTCCTCAAAGACTACTTTGACGGCAAGGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCCTATGGTGCTGCTGTTCAAGGAAGCATCTTGAGTGGAGAAGGTGGCGAAGAAACCAAAGATATTCTTCTTCTTGACGTTGCCCCTCTTACCCTTGGAATTGAGACTGTTGGTGGAGTGATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACCAAGAAATCTCAGGTCTTCACCACCTACCAAGATCAGCAGACCACCGTCTCCATTCAGGTCTTCGAAGGTGAGAGGAGTCTCACTAAGGACTGTAGGAACCTTGGAAAGTTCGATCTAAATGGAATTCCTCCAGCCCCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTTGATGCCAATGGTATCTTAAACGTTAAGGCCGAAGACAAGGGCACCGGTAAATCCGAGAAGATCACCATCACCAACGACAAGGGTCGGTTGAGCCAGGAGGAGATCGACCGGATGGTTCGTGAGGCCGAGGAGTTTGCGGATGAAGACAAGAAGGTGAAGGAGAGAATTGACGCCCGCAACAGCCTGGAAACCTACGTCTACAACATGAAGAACCAGATCAATGACAAAGACAAGCTTGCTGACAAGCTTGAATCTGATGAGAAGGAAAAGATCGAGACTGCCGTAAAGGATGCCCTCGAATGGCTCGACGACAACCAGAGCGGCGAGAAGGAAGACTACGAGGAGAAGCTCAAGGAAGTTGAGGCTGTCTGCAACCCCATCATCACTGCTGTTTACCAGCGATCCGGTGGTGCCCCGGGCGGCGAGTCGGCCGAAGATGATGAGTCTCATGATGAGCTCTAA 1998 47.95 MASSWRAPGSLIVLAIVFFGCLFAISIAKEEASKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFSDTERLIGEAAKNQAAVNPERTVFDVKRLIGRKFDDKEVQKDIKLFPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGTDISKDKRALGKLRRECERAKRALSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLNGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFADEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKDALEWLDDNQSGEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGESAEDDESHDEL 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67292809 67296867 + Sed0012984.1 Sed01g3812 703116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3812 665 Gene3D - 39 410 - -
Sed01g3812 665 Gene3D Actin; Chain A, domain 4 261 344 - -
Sed01g3812 665 FunFam Luminal-binding protein 5 571 646 - -
Sed01g3812 665 Gene3D - 571 665 IPR029048 -
Sed01g3812 665 FunFam Heat shock protein ssb1 100 155 - -
Sed01g3812 665 ProSitePatterns Heat shock hsp70 proteins family signature 2. 229 242 IPR018181 -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 503 519 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 175 195 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 363 379 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 395 415 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 65 77 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 235 245 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 37 50 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 422 441 - -
Sed01g3812 665 PRINTS 70kDa heat shock protein signature 87 95 - -
Sed01g3812 665 Pfam Hsp70 protein 38 645 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Sed01g3812 665 MobiDBLite consensus disorder prediction 644 665 - -
Sed01g3812 665 Coils Coil 615 635 - -
Sed01g3812 665 ProSitePatterns Heat shock hsp70 proteins family signature 3. 366 380 IPR018181 -
Sed01g3812 665 CDD HSPA5-like_NBD 36 410 IPR042050 -
Sed01g3812 665 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 418 575 IPR029047 -
Sed01g3812 665 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 652 IPR029048 -
Sed01g3812 665 SUPERFAMILY Actin-like ATPase domain 223 414 IPR043129 -
Sed01g3812 665 Coils Coil 581 601 - -
Sed01g3812 665 FunFam Heat shock 70 kDa 261 344 - -
Sed01g3812 665 PANTHER HSC70CB, ISOFORM G-RELATED 36 647 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
Sed01g3812 665 FunFam Heat shock protein 70 39 226 - -
Sed01g3812 665 Coils Coil 285 305 - -
Sed01g3812 665 Gene3D - 221 395 - -
Sed01g3812 665 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 417 570 IPR029047 -
Sed01g3812 665 ProSitePatterns Heat shock hsp70 proteins family signature 1. 41 48 IPR018181 -
Sed01g3812 665 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Sed01g3812 665 SUPERFAMILY Actin-like ATPase domain 36 220 IPR043129 -
Sed01g3812 665 FunFam Heat shock 70 kDa 417 571 - -
Sed01g3812 665 FunFam Chaperone protein HscA homolog 227 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3812 Sed-Chr1:67292809 Sed03g0077 Sed-Chr3:465813 1.30E-228 dispersed
Sed01g3812 Sed-Chr1:67292809 Sed05g0697 Sed-Chr5:5239685 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3812 K09490 - csv:101207505 1269.99