Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3830 ATGGATATGGATTTCGACTCTGTTTTTGACATTCCCGTCAAGTTCACCGAGCATCGCACCCGTGTTAAGCTCTTTTCCACGCCGGCAATTGCGCCGAGGACTGTACGGATCTTCGTCACCGACGGCGAGGCCACGGATTCGTCCAGCGACGATGAGGATGAAATGTTTGGTCGAAACAGAGTGAAGAAATTTGTGAATGAGATTTCGATTCAGCCGTCGTGTTCCGGCGAAGGGAACGGAACGGTGAGGACGGGCCGGAAACGGCCGGCCGGGAAATGTGGGTTTCCGACGAGGAGTCGTCCGTCGGTGAAGATTACGGCCGGGAAGAAGTTTCGCGGTGTTAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCGCTCCGCCGCGTACGGCTGTGGCTTGGAACTTACGACACGGCGGAGGAAGCGGCCATGGTGTACGACAACGCCGCCATTCAACTCCGGGGACCGGATGCACTCACTAATTTCACAACCCAACCGCCCAAAAAATGCTCCGGCTACAACTCCGGCGAGGAGTCGAACAACAACGTTTGCTCTCCGACCTCCGTCCTCCGATGCCCGTCGCCGCCGTCAACCGAAGAGGCTCAGTCTCAACTTCCCGGCGAGCCGGGAAACTCCTGCGTGTCGGAAAATTTCTCATCGGAGTTCTCCGATTTCTCGAGCTGTTCCGATACATTCATTCCCAACGACATTTTCTCCTTCGAAAATTCGATTCCGACCTTGTTCGCCGACGATTTTAGTCTCCATCACGAAACCAACTCCTCCGGCGACGACGGTTTCTTCAACGGCGTGTTCCACAGTCCGGTCGATGAAACCGGATCCGGATCTGGTTTCGGGTTTGAATACCCGATTCCCCCTTCCGACGACTGCTTTCAAGACTTCAGCGACGTGTTCGGGTCGGATCCTCTGGTCGCCCTCTAA 951 56.05 MDMDFDSVFDIPVKFTEHRTRVKLFSTPAIAPRTVRIFVTDGEATDSSSDDEDEMFGRNRVKKFVNEISIQPSCSGEGNGTVRTGRKRPAGKCGFPTRSRPSVKITAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPPKKCSGYNSGEESNNNVCSPTSVLRCPSPPSTEEAQSQLPGEPGNSCVSENFSSEFSDFSSCSDTFIPNDIFSFENSIPTLFADDFSLHHETNSSGDDGFFNGVFHSPVDETGSGSGFGFEYPIPPSDDCFQDFSDVFGSDPLVAL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67478298 67479885 - Sed0005122.1 Sed01g3830 703134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3830 316 SMART rav1_2 110 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3830 316 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3830 316 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3830 316 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677(InterPro)
Sed01g3830 316 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3830 316 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3830 316 CDD AP2 109 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3830 316 MobiDBLite consensus disorder prediction 75 99 - -
Sed01g3830 316 Pfam AP2 domain 110 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3830 316 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 216 IPR050913 -
Sed01g3830 316 MobiDBLite consensus disorder prediction 175 217 - -
Sed01g3830 316 FunFam Ethylene-responsive transcription factor 2 109 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3830 Sed-Chr1:67478298 Sed13g0091 Sed-Chr13:591266 7.40E-62 dispersed
Sed01g3511 Sed-Chr1:64243199 Sed01g3830 Sed-Chr1:67478298 1.50E-31 wgd
Sed01g3830 Sed-Chr1:67478298 Sed13g0805 Sed-Chr13:5981464 1.10E-60 wgd
Sed01g3830 Sed-Chr1:67478298 Sed05g0731 Sed-Chr5:5498750 2.30E-111 wgd
Sed01g3830 Sed-Chr1:67478298 Sed07g1568 Sed-Chr7:12484251 2.10E-56 wgd
Sed01g3830 Sed-Chr1:67478298 Sed07g0965 Sed-Chr7:7070016 1.50E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37406 PF00847 AP2 1.30E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3830 - - - 0.0