Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3832 ATGGAAGCTCTGTGGATTTTCAGCTTTGTTTTTGTTCTGGGGTTGGTTTTTTCGCCGATTAATGGCGACCCAGTTGAAGATAAGCGAGCTTTGCTTGATTTTTTGAAGAATCTTCCTCATTCTCGCTCTCTTAATTGGAATGCAGGTTCTAAGGTTTGTAATTACTGGACTGGTATAACTTGTAGTGATGATGAGTCTCGTGTTATAGCCGTTCGATTGCCCGGAGTCGGCTTCCACGGTCCGATTCCGGCGAATACTCTCGGCCGGCTCTCGGCTCTGCAGATATTGAGTTTGAGATCTAATGGTATAACTGGGGATTTCCCTTCTGATTTCTTGAATCTTAGTAACTTGTCTTATCTTTTTCTTCAATTCAATAGCTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTTTGGAAGAATCTCACATTTCTGAATCTCTCTAACAATAGATTCAATGGCAGCATTCCTTATTCGCTTTCGAATCTTTCGGCGCTCACAGGTTTGAATCTTGCAAATAACTCTCTTACAGGAGATATACCAAACCTCCAATTGCCCAAATTGCAAGTTTTGAATTTGTGTAACAACAATTTGAGTGGGAATGTGCCCAAGTCTTTACAGAGATTTCCAAGCTCTGTATTTGTAGGCAATGAGTTATCCATTGAGAGTTTCTTGCCAAACAATCCTCCCGTGCCCTCGCCAGTACCCATGTTGAACGAAAAACCGAAGAATGCTAGGCGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTTTAGCTTTTGGATTTCTTATACTTGTTTGCTGCTCAATAAGGAAGAGGGATGAATATGCCGAGGATATGCAGAATGGCGGGATGTCGCCCGAGAAGGTGATATCGAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGTCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTCCTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACTTCAGTTGTTGTTAAGAGGTTGAAAGATGTAAGCGCCGGGAAACGTGATTTCGAGCAGCAAATGGAGATTGTTGGTAGTATCAGGCATGAGAATGTGGTTGAGTTGAAGGCTTACTATTATTCCAAAGACGAGAAGCTGATTGTCTATGATTTCTATGCCCAGGGAAGCGTCTCGGCTATGTTACACGGTAAATGCGGAGAACGAAAGAATTCATTAGATTGGGACACTAGACTAAGAATTGCAGTTGGTGCAGCGCGTGGAGTTGCCCGCATCCATGTCGAAAACGGAGGGAAGCTCGTCCATGGAAATGTGAAAGCCTCGAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACAATAACAACCTCACTCTCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTAACAGACACCCGAAAGGCAACACAGGCTTCAGATGTTTTCAGCTTAGGTGTAGTGCTCCTTGAGCTTCTAACCGGGAAGTCTCCGTTACACGCTACAGGCGGCGAAGAGATAATCCACTTGGTGAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAAGTGTTTGATTTAGAACTGATGAAGTACCCCAACATAGAGGAAGAAATGGTTGAGATGTTGCAGATAGCCTTATCATGTGTGGCCAGGATACCAGATGAGAGACCGAAAATGGTGGAGGTCGTGAAGATGATCGAAAACGTTCGACCGATGGAAAACGAGACTCGACCGTTCTCCAAGTACCAATCTGAAAGTCCAATGCCTCACAGTGACATGGAGCCAATTTGA 1872 44.66 MEALWIFSFVFVLGLVFSPINGDPVEDKRALLDFLKNLPHSRSLNWNAGSKVCNYWTGITCSDDESRVIAVRLPGVGFHGPIPANTLGRLSALQILSLRSNGITGDFPSDFLNLSNLSYLFLQFNSFSGPLPSNFSVWKNLTFLNLSNNRFNGSIPYSLSNLSALTGLNLANNSLTGDIPNLQLPKLQVLNLCNNNLSGNVPKSLQRFPSSVFVGNELSIESFLPNNPPVPSPVPMLNEKPKNARRLGEAALLGIIIAGGILGLLAFGFLILVCCSIRKRDEYAEDMQNGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATSVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLIVYDFYAQGSVSAMLHGKCGERKNSLDWDTRLRIAVGAARGVARIHVENGGKLVHGNVKASNIFLNSQQYGCVSDLGLATITTSLSPPISRAAGYRAPEVTDTRKATQASDVFSLGVVLLELLTGKSPLHATGGEEIIHLVRWVHSVVREEWTAEVFDLELMKYPNIEEEMVEMLQIALSCVARIPDERPKMVEVVKMIENVRPMENETRPFSKYQSESPMPHSDMEPI 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67510228 67513466 - Sed0016764.1 Sed01g3832 703136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3832 623 ProSiteProfiles Leucine-rich repeat profile. 140 163 IPR001611 GO:0005515(InterPro)
Sed01g3832 623 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Sed01g3832 623 Pfam Leucine Rich Repeat 116 136 IPR001611 GO:0005515(InterPro)
Sed01g3832 623 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Sed01g3832 623 Pfam Leucine Rich Repeat 93 114 IPR001611 GO:0005515(InterPro)
Sed01g3832 623 SUPERFAMILY L domain-like 37 208 - -
Sed01g3832 623 Pfam Protein kinase domain 329 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3832 623 Gene3D Phosphorylase Kinase; domain 1 292 399 - -
Sed01g3832 623 Gene3D Transferase(Phosphotransferase) domain 1 401 613 - -
Sed01g3832 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 607 - -
Sed01g3832 623 FunFam pollen receptor-like kinase 1 294 399 - -
Sed01g3832 623 PANTHER OS05G0588300 PROTEIN 8 603 IPR050994 -
Sed01g3832 623 Gene3D Ribonuclease Inhibitor 25 227 IPR032675 -
Sed01g3832 623 ProSiteProfiles Protein kinase domain profile. 325 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3832 623 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Sed01g3832 623 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Sed01g3832 623 SUPERFAMILY Protein kinase-like (PK-like) 329 593 IPR011009 -
Sed01g3832 623 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524(InterPro)
Sed01g3832 623 MobiDBLite consensus disorder prediction 603 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3832 Sed-Chr1:67510228 Sed07g0968 Sed-Chr7:7106765 1.60E-164 dispersed
Sed01g3515 Sed-Chr1:64263226 Sed01g3832 Sed-Chr1:67510228 1.60E-156 wgd
Sed01g3832 Sed-Chr1:67510228 Sed05g0734 Sed-Chr5:5535172 4.50E-260 wgd
Sed01g3832 Sed-Chr1:67510228 Sed07g0967 Sed-Chr7:7106765 1.60E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78743 PF00069 Pkinase 1.10E-34 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3832 - - - 0.0