Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3841 ATGAGAAGAAAAAATATCCAAGCTATTCTGTTTCTAGCACTATTCTCTGCATTTTCATCATCTCTAGCTTATTCCTCACCCTTATCAACACAAGGAAGATGGATCATCGACTCGAACACCGGGCGTCGAGTGAAGCTCGCTTGCGTAAACTGGCCATCCCACACGGAGAGCATGTTGATAGAAGGCCTCAACCACAGGCCATTAAAAGAACTCGCAGACGAAGCGGTGAAGTTGAGATTCAACTGCGTGCGACTGACGTATGCGACTCACATGTTCACTCGCTATGCGAATAGAACCGTCGAAGAGAATTTCGAGCTTCTGCATTTAGAAGAAGCAAAAGCTGGAATGGCTGGATATAATTCTTTTGTTGGTTTAATGGTAATTGTTGACAATCACATGAGCCAGCCTACATGGTGTTGCTCTGGTGATGATGGCAATGGCTTCTTTGGCGACCGCTATTTTGACCCTCAAGAATGGTTAAAAGGCCTTAGCTTTGTTGCTCAACGCTTCACCCATAAATCCACGTATATAACTCAAGGAGTAACAACAATCCACAACATTAACCCACAAGTCCTAGTCATTGTTTCTGGCCTAAATCATGATAGTGATCTTCGAGTTCTAAAGGAAAAGCCCTTAAATGTAGGCACTTTAGACAACAAGTTAGTTTTTGAAGTGCACTTATATGCATTCGGTAGATTTTCACATCGATCACTAAACGACGTGTGTGCGAATATTATCGGTGGCTTCATCGACAATTCGGAATTTGTAACGGAAGGATCGAACCCGTTTCCATTATTTGTCACTGAATATGGGTATGATCAAAGAGAAATTGATGTTTCTGGAAATCGATTTATGAGTTGCTTTAGTGCTCATCTTGCACAAAAGGACTTGGATTGGGCATTGTGGGCTTGGCAAGGTAGCTATTATTATAGGGAAGGTCAATCTGAGGCTGGTGAAGTTTTTGGAGTTCTTGACTCTAATTGGACTCAAACTAAAAATCCTAACTTTGTCCAAAAGTTTCAACTATTGCAAACCATGTTGCAAGTCTCAAATGACAACAAAGGTGTTTTGATGAGCAATTGCACAAGCTCAAGTGGATGGAGTCATGACAAAGATGGAAGTCCAATTAGGATGTCAAGAACTGGTTTATGCTTAGTGGCTAATGGGGAAGGTCTTGAGCCATCTCTCTCATTTGACTGCTTAGGTCAACATAGTTCTTGGACAGCCATTTCAAATTCTAAGCTTCATTTGGCTACCATCACTCAAGATGGAAAAAATCTTTGCTTGCAGATTGAAAGCTCCAATTCTTCCAAAATTGTTACCAACTCATGTATTTGCACTAATGATGATCCAAATTGTTTTCAAGACACCCAAAGTCAATGGTTTGAACTTGTTGCAACCAACACTTTGTGA 1413 40.98 MRRKNIQAILFLALFSAFSSSLAYSSPLSTQGRWIIDSNTGRRVKLACVNWPSHTESMLIEGLNHRPLKELADEAVKLRFNCVRLTYATHMFTRYANRTVEENFELLHLEEAKAGMAGYNSFVGLMVIVDNHMSQPTWCCSGDDGNGFFGDRYFDPQEWLKGLSFVAQRFTHKSTYITQGVTTIHNINPQVLVIVSGLNHDSDLRVLKEKPLNVGTLDNKLVFEVHLYAFGRFSHRSLNDVCANIIGGFIDNSEFVTEGSNPFPLFVTEYGYDQREIDVSGNRFMSCFSAHLAQKDLDWALWAWQGSYYYREGQSEAGEVFGVLDSNWTQTKNPNFVQKFQLLQTMLQVSNDNKGVLMSNCTSSSGWSHDKDGSPIRMSRTGLCLVANGEGLEPSLSFDCLGQHSSWTAISNSKLHLATITQDGKNLCLQIESSNSSKIVTNSCICTNDDPNCFQDTQSQWFELVATNTL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67668778 67677231 - Sed0012306.1 Sed01g3841 703145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3841 470 Pfam Cellulase (glycosyl hydrolase family 5) 174 305 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Sed01g3841 470 SUPERFAMILY Ricin B-like lectins 346 449 IPR035992 -
Sed01g3841 470 Gene3D Glycosidases 176 346 - -
Sed01g3841 470 SUPERFAMILY (Trans)glycosidases 25 338 IPR017853 -
Sed01g3841 470 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 175 468 - -
Sed01g3841 470 Gene3D Glycosidases 25 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3841 K01179 - - csv:101207450 716.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3841 Sed-Chr1:67668778 Sed05g0742 Sed-Chr5:5690217 7.40E-207 dispersed
Sed01g3840 Sed-Chr1:67663661 Sed01g3841 Sed-Chr1:67668778 6.20E-226 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g608 . . . . . . Bma14g01831 . . . . . . . Sed01g3841 . Cpe01g01578 Bhi07g01832 Tan04g0135 Cmetu01g1934 Lac13g0118 Hepe10g1569 . . Cla05g02615 Cam05g2803 Cec05g2839 Cco05g2871 Clacu05g2806 Cmu05g2655 Cre05g2771 . . Cone8ag0705 . Lsi04g00629 Csa05g02259 Chy10g00829 Cme10g00603 . Blo11g01038 Bda07g01647 . . . . . . . . Cma04g01789 . Car04g01805 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241